barSeed - Barley Seed Development Database

Probe CUST_38311_PI390587928

Source Contig U35_43936

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38311_PI390587928	Hv_44K_v2	TTCCACTCCACACAGCGCTCGGATTTTACATAGGCGGTCTGCATATAGTAGAAGCAAATA	0	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.507	2.483	2.127	1.023	0.461	0.428
Raw	322.181	870.261	611.059	470.573	72.695	74.067

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370608	1956	2e-24	1750 - 1809	100	60 / 60	plus	ABC39707 ABC41237
MLOC	MLOC_40066.1	901	2e-24	251 - 310	100	60 / 60	plus	ABC39707 ABC41237
JLOC1	JLOC1_26177.1	688	8e-25	251 - 310	100	60 / 60	plus
Harvest21	ABC41237	336	3e-25	1 - 60	100	60 / 60	minus	ABC41237
Harvest21	ABC39707	526	3e-25	218 - 277	100	60 / 60	minus	ABC39707
Harvest35	U35_43936	336	3e-25	1 - 60	100	60 / 60	minus
Harvest35	U35_43244	526	3e-25	218 - 277	100	60 / 60	minus

Contig Sequence (336 bp)

>U35_43936 336 Hv_44K_v2
TATTTGCTTCTACTATATGCAGACCGCCTATGTAAAATCCGAGCGCTGTGTGGAGTGGAA
CCTCTAGCTTCCGGGCGTGAACTTCATGCACATCGGCGGCTTGATCTTGGCCAGCGCGAG
CAGCGACGACGGGAATATCCATATCCCGTCGCCGCAGATGAAGCCGGAGGCCACCGCCGG
TATGAGCAGCGCGGCCTTCTTCCCGTCGAGCTTGTGCCATAGGAACACGACGAGGCTCCC
CACGCACATGTCGATGGCGAAGCTGGCGATCACCACGAAGTACCACTTCACCTCCCGGAA
CATGAGCNGGGATGGCCACCACCGCCACCGCGCTGA

Homology of Contig U35_43936 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None