barSeed - Barley Seed Development Database

Probe CUST_38302_PI390587928

Source Contig U35_29648

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38302_PI390587928	Hv_44K_v2	GTATCTTGTAATCTTAATTCGATTCTCCAATCACCGAGGTTGTATAGTGACAATGCATAT	383	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.510	0.770	1.310	1.912	1.127	1.246
Raw	258.185	616.025	914.906	2081.356	432.099	521.990

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367852	3301	2e-24	1667 - 1726	100	60 / 60	plus	None
MLOC	MLOC_66327.1	3233	2e-24	1942 - 2001	100	60 / 60	minus	None
MLOC	MLOC_66327.2	3247	2e-24	1860 - 1919	100	60 / 60	minus	None
MLOC	MLOC_66327.3	3013	2e-24	1722 - 1781	100	60 / 60	minus	None
JLOC1	JLOC1_43688.2	3218	8e-25	1232 - 1291	100	60 / 60	plus
JLOC1	JLOC1_43688.1	3288	8e-25	1222 - 1281	100	60 / 60	plus
Harvest21	ABC29032	482	3e-25	384 - 443	100	60 / 60	plus
Harvest35	U35_29648	482	3e-25	384 - 443	100	60 / 60	plus

Contig Sequence (482 bp)

>U35_29648 482 Hv_44K_v2
GCAAGTTACCTCGAAGATCTATGGATTTGCGGACACACGTGAATTAGAAGACAATCGTCA
GCTGAGTTGGAGATGTTCAAAGAACGGTGGGAAAAAGCCGTGAGGGAGGATGACGAGTGG
ATGGATCCTTTTGACGCCTGATTACTTTGGAAGAATTATTATCTGACATGATGATACAAG
GCCCACAATACATGGGTGGATGCGTCCACATTCATCATGGCGGTTGGAGCCGAGATCATG
TGGGCCTCATAGCAAAACAGTTACTCTTTTGCTGACTTACACACACCACTCTGCCCTCAA
GAGCTAGAAGAACAAGTGGGAACGGCGTCGCTAATACATGGAGAGACTGAGCAAGAACCC
TTATACCACCAGTGACTGACACAGTATCTTGTAATCTTAATTCGATTCTCCAATCACCGA
GGTTGTATAGTGACAATGCATATATGTATGTGCAGTTATTTTAGCAAAATAATTATTTAT
AC

Homology of Contig U35_29648 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None