barSeed - Barley Seed Development Database

Probe CUST_382_PI415269222

Source Contig TA51133_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_382_PI415269222	Hv_44K_v2	ACAAAGGACTTTCTGTCAGTTTGTCCACTGCAAATGAATTCACTGATCGAATATGTAGAA	480	GeneList: mediumpurple3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.053	3.003	1.198	0.783	0.393	0.477
Raw	569.453	638.149	221.686	223.484	41.984	54.799

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62791.1	1658	2e-24	5 - 64	100	60 / 60	minus	ABC12694
MLOC	MLOC_62791.2	1667	3e-22	1612 - 1667	100	56 / 56	plus	ABC12694
JLOC1	JLOC1_41113.4	1788	8e-25	1642 - 1701	100	60 / 60	plus
JLOC1	JLOC1_41113.3	2009	8e-25	1863 - 1922	100	60 / 60	plus
JLOC1	JLOC1_41113.2	1719	8e-25	1573 - 1632	100	60 / 60	plus
JLOC1	JLOC1_41113.1	1400	8e-25	1254 - 1313	100	60 / 60	plus
Harvest21	ABC12694	1434	3e-25	1355 - 1414	100	60 / 60	plus	ABC12694
Harvest35	U35_19762	1434	3e-25	1355 - 1414	100	60 / 60	plus

Contig Sequence (543 bp)

>TA51133_4513 543 Hv_44K_v2
CAACGTGACGATGGAGAAGGTCAAGGTGCCAATAAGGTTCAGCAGGGGTTCAGATGATCA
CTCTGACGACAAGTATGACCGGACAGCGCTACCCATGATCAGTGGCATTCATATTGTCGA
CATTGTTGGCGTGGATGTGCAGCGCGCACCAATGCTGGAGGCGGTGCACGGCGCGGTCTA
TGAGGGGATCTGCTTCAGAAACGTTAGCCTGAGAGCGATAAGGCGTCAGGTACGGTGGCA
ATGCGAGTCTGTGTATGGAGAGGCGCATGAAGTTTTCCCTGCACCTTGTGAAGAGTTGAG
GAATAATGGGTCTTCTTCTTCTTGGTGTGGCCTTCCCTGAGCAACTGTACAGAACTTGTA
AGATTTTGATGGGTGAAATGGTGTGTCTATACTTGTGTTTAGAGAAGGACAAAGATAGAA
CTTACAGGCAGATCCAACACTGAGACTTGTATTCTTTGTTTTGTAAAACGTCTAGAGGGC
ACAAAGGACTTTCTGTCAGTTTGTCCACTGCAAATGAATTCACTGATCGAATATGTAGAA
GGC

Homology of Contig TA51133_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None