barSeed - Barley Seed Development Database

Probe CUST_38297_PI390587928

Source Contig U35_17670

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38297_PI390587928	Hv_44K_v2	GCTTGGATAAACTTTGACCACCCATTGGGTTGAGGATATGATTGAATGGGAATATTTTTT	1276	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363669	3474	2e-24	1954 - 2013	100	60 / 60	plus	ABC07230 ABC13844 ABC17852 ABC41122 ABC44969
MLOC	MLOC_25268.1	838	7e-23	536 - 595	98	59 / 60	minus	ABC07230
JLOC1	JLOC1_17299.1	741	4e-23	439 - 498	98	59 / 60	minus
Harvest21	ABC07230	1365	3e-25	1277 - 1336	100	60 / 60	plus	ABC07230
Harvest35	U35_17670	1365	3e-25	1277 - 1336	100	60 / 60	plus

Contig Sequence (1365 bp)

>U35_17670 1365 Hv_44K_v2
GCTGCAAGATTACCTGAGAAGATTGGAGGAAACTTACCTGGAGTTCACTATATACGTGAC
GTTGCTGATGCTGATTCTCTAGTATCTTCATTGGGAAAATCAAAGAAAATTGTTGTTATT
GGTGGGGGCTATATTGGCATGGAGGTAGCTGCTGCAGCTTGTGGCTGGAATCTTGACACA
ACTATAATATTCCCAGAAGACCACATAATGCCAAGATTATTTACGCCTTCGCTTGCTAAG
AAGTATGAGGAACTGTATGAGCAAAATGGTGTCAAATTCGTAAAGGGAGGTCTCATCAGC
AAACTTGATGCTGGTTCTGATGGAAGGGTGTCTTCGGCTATACTTAAAGATGGTTATTGT
TGGTATAGGAGCAAAACCATCTGTCAGCCCCTTCGAAGCTGTGGGAGTTAACAACGAAGT
TGGTGGAATAGAGGTTGATTCCATGTTTAGAACAAGTATACCTAGCATCTTTGCTATCGG
AGATGTGGCAGCTTTTCCGCTCAAGATGTATGATAGAATAGCTCGAGTGGAGCATGTGGA
TCATGCTAGAAAGTCTGCACAACATTGTATAGAAACACTCTTAACATCCCAGGCAAAAGC
GTATGACTACCTTCCGTATTTCTATTCTCGAGTTTTTGAGTATGAAGGAAGCTCCAGGAA
AATTTGGTGGCAATTCTATGGAGATAATGTTGGTGAAACAATTGAAGTAGGGAACTTTGA
TCCTAAGATAGCTACCTTCTGGATTGACTCTGATAGTCGATTGAAGGGTGTTTTCCTTGA
GAGTGGAACCTCAGAGGAATTCTCGCTTCTTCCACAGATCGCAAGATCACAGCCCATTGT
AGACAAAGCTAAGCTCAAGAGTGCAACTTCAGTCGAAGATGCATTAGAGATTGCGAGAAG
CTCTCTTTAGTCTGTTTTTTTCTATTTAACTAGTTGTCAACACATATGGCCTCTTGGTTT
GGGACTGCAGCTTCTTTTGAAAAGTCAGGACTACGATGAAAATAATGCGGCCAGAGTATC
TGTTTTATGCGGGGCCCATTGTAGACAAAGCTAAGCTCAAGAGTGCAACTTCAGTCGAAG
ATGCATTAGAGATTGCGAGAAGCTCTCTTTAGTCTGTTTTTTTCTATTTAACTAGTTGTC
AACACATATGGCCTCTTGGTTTGGGACTGCAGCTTCTTTTGAAAAGTCAGGACTACGATG
AAAATAATGCGGCCAGAGTATCTGTTTTATGCGGGGTTTGTAGTTTTCTTAGATGCCCCT
CGGCTGCCATTTTCTAGCTTGGATAAACTTTGACCACCCATTGGGTTGAGGATATGATTG
AATGGGAATATTTTTTTTCGCGAGTTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_17670 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g05570.4	492	7e-101	protein\|monodehydroascorbate reductase, putative, expressed
Brachypodium v1_2	Bradi3g17120.2	496	1e-107
Arabidopsis v10	AT1G63940.2	493	2e-115	\| Symbols: MDAR6 \| monodehydroascorbate reductase 6 \| chr1:23730095-23733534 FORWARD LENGTH=493