barSeed - Barley Seed Development Database

Probe CUST_38291_PI390587928

Source Contig U35_17673

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38291_PI390587928	Hv_44K_v2	AATCAATGTGAACTTGTTACTTGCCTAATGATGGTCCAGTTTATGCTTTTTTATGGGTTC	1717	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.816	1.617	1.265	0.902	0.335	0.323
Raw	91.624	128.151	87.320	96.089	12.903	13.231

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_41731.2	1988	6e-21	1868 - 1926	97	57 / 59	plus
JLOC1	JLOC1_41731.1	3427	6e-21	3307 - 3365	97	57 / 59	plus
Harvest35	U35_17673	1791	3e-25	1718 - 1777	100	60 / 60	plus

Contig Sequence (1791 bp)

>U35_17673 1791 Hv_44K_v2
AACGACCCCCCGCCCCCGAGCTCGCGAATCACCCGAAGCCGCCGCCATGGGCGACTACGG
CAACGCGATGATGCGGAACCAGGATGCGGGCGTGCAGACCCGTGTGAAGGCGCAGAGCCG
CGCCAACCTCCTCCAGCTCAAGCTCATCGGGCAGAGCCATCCGACGGGGCTGACGACGAA
CCTGCTGAAGCTGTTCGAGCCACGGCCTCCGCTCGAGCACAAGCCGCCGCTCGAGAAGCG
CAAGTTGCCAGCTTACACTGGGATGTCGCAGTTTGTATCGCGGTTCGCGGAGCCTGGTGA
CCCGGAGTATGCTCCGCCTGTCCCCACGTGCGAGACTAGGGCTGAAAAAAAGGATAGAAT
CCGCCAACTTAAGCTTGAGGAAGGTGCAGCTAAGGTTGCTGAAGAGCTCCAGAAGTATGA
CCCACAAAATGACCCCAATGTCACTGGAGATCCATACAAAACACTCTTTGTTGCACGACT
TGGCTACGAGACATCCGAGCAGAAGGTTAAAAGGGACTTTGAAGCTTATGGGCCTATTAA
AAGGGTACGACTCATAACTGACCAGGTAACAAATAAGCCTAGAGGATATGCATTCGTAGA
GTATGCGCACACTCGGGACATGAAAAGTGCTTACAAGCAAGCTGATGGGAGAAAAGTGGA
TAACAAAAGGGTGCTTGTTGACGTAGAGCGTGGTAGAACTGTTCCAAATTGGCGTCCTAG
GAGATTGGGTGGTGGACTTGGATCAAGCAGGATTGGTGGTGAAGATGCTGCCCAGAAGCA
TTCTGCTAGAGAGCAACAGAACGCCGCTGGGCGCCCCAGATCAGAAGAGCCTAGGAGGGA
TGATCGTTCTGCAGATCGGGATCGCGAGAAATCTCGTGATAGGGTACGGGAAAGAGATCG
TGACGAGAAAACTCGTGAACGCTCGCATGACAGGGCTCGTGATCGTGATCCAAGGGAAGA
TAGACACCACCATAGAGATCGTGAGAGAACTCGTGATAGGGATCGAGAAAGGGACCAGGA
GAGAGACCGTGGGCGTGACCGCCGTGATAGGGATAGGCACAAGGATCATGGCCGGGATAG
AGACCAGGACAGAGACAGGAAACGTGAGCGCTCTCATGGCAGAGGCAGGGACCGTGACAG
AGATTACGAGCGTGCAAGTCACGAACAGGACCCTGGCAGGGACCGAGATTACAAGCGTGC
GCGCCATGAACATGAACGTGGTCACTTGCAGGCGAGTGATGCTGATTATGGTAATGGTGA
GCCTGGCTATAACCAGCATGAGCACCACAGAAGTCATGAACAGTATGGTTATGGCCTAGA
TGGACATGATCGCTCAAAGCGACATGAGCATTACCGTGATGATTCACACAGTAAAATGGC
AACCAACCATCAGGGGCAACCTGAAAATGCAGAACCTGCAGTCCCCGAGGAGGGGGAGGC
ATATGAAGAAGGGGACTACCAGCATATCCAAGCGGGTGAATACAGGAACTAAAAACTTGA
AAGCTGTGTGGTAAGGCTTATTAATGCAGTAAAAATATTTGCATCAGTTTTGCTGTTCCC
AGTGGTTCTCTCGTTGCTTAGGGAGGCAGAAGCTTTTTCTTGTTGGCACTTCCAGTGTTA
GCCTACTTGTTTTGGTGTGTTTTGTTTGTTGTATGTTATTTGTAATAATTTGCTGGATAA
TGCTTGTGGTTTGTATGTGATTTTGAAGCCAATGGCCAATCAATGTGAACTTGTTACTTG
CCTAATGATGGTCCAGTTTATGCTTTTTTATGGGTTCAAAAAAAAAAAAAA

Homology of Contig U35_17673 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g02630.1	464	2e-130	protein\|transposon protein, putative, CACTA, En/Spm sub-class, expressed
Brachypodium v1_2	Bradi3g30430.1	479	3e-159
Arabidopsis v10	AT3G50670.1	427	2e-117	\| Symbols: U1-70K, U1SNRNP \| U1 small nuclear ribonucleoprotein-70K \| chr3:18826476-18829492 REVERSE LENGTH=427