barSeed - Barley Seed Development Database

Probe CUST_3828_PI390587928

Source Contig U35_26320

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3828_PI390587928	Hv_44K_v2	GGCACTACTTCATTTCCTTGATCCAGTCAAATTTAACAGCAAGGATACTTTTGTTGAGAG	319	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363877	6637	2e-24	2826 - 2885	100	60 / 60	plus	None
MLOC	MLOC_39013.1	1245	2e-24	437 - 496	100	60 / 60	minus	None
JLOC1	JLOC1_25414.1	885	8e-25	365 - 424	100	60 / 60	plus
Harvest35	U35_26320	396	3e-25	320 - 379	100	60 / 60	plus

Contig Sequence (396 bp)

>U35_26320 396 Hv_44K_v2
GGAAGTGGCTACCTGACATGAATGTTGTAATTTATGTCGGAAATCGTGCCAGCAGAGAGA
TGTGTCAGCAGCATGAGTTCTTTACAAATAAGAAGGGTGGACGGCATGTAAAATTCCATA
CTTTGATAACTACTTATGAGGTGATACTTAAGGACAAAGCCGTCCTTTCAAAAATCAAAT
GGAGTTATCTTATGGTTGATGAAGCCCACCGTTTGAAGAATTCTGAAGCATCACTGTATA
TTGCTCTTTTGGAGTTCAGCACCAAAAATAAGCTGCTAATAACTGGGACCCCTTTGCAGA
ACAGTGTTGAAGAGCTTTGGGCACTACTTCATTTCCTTGATCCAGTCAAATTTAACAGCA
AGGATACTTTTGTTGAGAGATACANNAAATTGAGTT

Homology of Contig U35_26320 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi1g18910.1	1735	7e-81
Arabidopsis v10	AT2G13370.1	1724	1e-65	\| Symbols: CHR5 \| chromatin remodeling 5 \| chr2:5544601-5555543 REVERSE LENGTH=1724