barSeed - Barley Seed Development Database

Probe CUST_38282_PI390587928

Source Contig U35_14147

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38282_PI390587928	Hv_44K_v2	ATTCACACGAAAGTATAGGAAAACAGACCGGCTAATAACGGCTCTACGACGAAAACTAGT	516	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358921	891	2e-24	766 - 825	100	60 / 60	minus	ABC01382
MLOC	AK252163.1	776	2e-24	667 - 726	100	60 / 60	minus	ABC01382
MLOC	MLOC_60375.1	980	2e-24	8 - 67	100	60 / 60	plus	ABC01382
JLOC1	JLOC1_39362.2	1245	8e-25	909 - 968	100	60 / 60	minus
JLOC1	JLOC1_39362.1	929	8e-25	593 - 652	100	60 / 60	minus
Harvest21	ABC01382	920	3e-25	790 - 849	100	60 / 60	minus	ABC01382
Harvest21	ABC01379	575	3e-25	516 - 575	100	60 / 60	plus
Harvest35	U35_14154	937	3e-25	790 - 849	100	60 / 60	minus
Harvest35	U35_14147	576	3e-25	517 - 576	100	60 / 60	plus

Contig Sequence (576 bp)

>U35_14147 576 Hv_44K_v2
CAGCTTCTCCCTCCCATCCATCCCCGGATTCCCTAGCGCGGAGCAGTAGCAGCAGCAGCT
GAGCGCCGGCGGCCATGGTGATCTCGCACGCGAGCTCCAGCGCGGGGGAGTCCGTCTACT
CCACCTTCTCCTCGCGCTACGTGCGCGAGGAGCTCCCGCGGTACCGGATGCCGGAGAACT
CGATCCCCAAGGAGGCGGCGTACCAGATCATCAGCGACGAGCTGATGCTGGACGGCAACC
CGCGGCTGAACCTGGCGTCCTTCGTCACCACCTGGATGGAGCCCGAGTGCGGCAAGCTCA
TCATGGACTCCGTCAACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGC
TCCAGAACCGTTGCGTAAACATGATAGCTCACTTGTTCAATGCACCGATCGGCGAGGACG
AGACGGCTATCGGAGTCTCGAGNTTTTTTTTTTTTTTTTTTTTTTCAGCAAGTCGTTATA
CTTTTTTATAGCAAAATGAGAAACATTATCGTCTAAATTCACACGAAAGTATAGGAAAAC
AGACCGGCTAATAACGGCTCTACGACGAAAACTAGT

Homology of Contig U35_14147 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g36320.4	327	3e-66	protein\|decarboxylase, putative, expressed
Brachypodium v1_2	Bradi3g37830.1	500	5e-70
Arabidopsis v10	AT5G17330.1	502	3e-65	\| Symbols: GAD, GAD1 \| glutamate decarboxylase \| chr5:5711141-5714839 FORWARD LENGTH=502