barSeed - Barley Seed Development Database

Probe CUST_3827_PI390587928

Source Contig U35_40613

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3827_PI390587928	Hv_44K_v2	ACTTAGAAGCTGAGAATCATGTTCTCCGTCAGCAAGCAATTGCTACTCCACCTTCTACTG	557	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56893.13	4043	2e-24	1847 - 1906	100	60 / 60	minus	None
MLOC	MLOC_56893.14	3371	2e-24	1847 - 1906	100	60 / 60	minus	None
MLOC	MLOC_56893.15	3707	2e-24	1847 - 1906	100	60 / 60	minus	None
MLOC	MLOC_56893.9	1819	2e-24	1685 - 1744	100	60 / 60	minus	None
MLOC	MLOC_56893.1	3953	2e-24	1929 - 1988	100	60 / 60	minus	None
MLOC	MLOC_56893.10	3852	2e-24	1856 - 1915	100	60 / 60	minus	None
MLOC	MLOC_56893.11	3516	2e-24	1856 - 1915	100	60 / 60	minus	None
MLOC	MLOC_56893.12	3180	2e-24	1856 - 1915	100	60 / 60	minus	None
MLOC	MLOC_56893.5	3501	2e-24	1920 - 1979	100	60 / 60	minus	None
MLOC	MLOC_56893.6	3837	2e-24	1920 - 1979	100	60 / 60	minus	None
MLOC	MLOC_56893.2	4152	2e-24	1929 - 1988	100	60 / 60	minus	None
MLOC	MLOC_56893.3	3816	2e-24	1929 - 1988	100	60 / 60	minus	None
MLOC	MLOC_56893.16	2506	2e-24	335 - 394	100	60 / 60	minus	None
MLOC	MLOC_56893.4	3459	2e-24	1921 - 1980	100	60 / 60	minus	None
MLOC	MLOC_56893.7	3999	2e-24	1828 - 1887	100	60 / 60	minus	None
JLOC1	JLOC1_36819.10	4029	8e-25	2098 - 2157	100	60 / 60	plus
JLOC1	JLOC1_36819.9	4038	8e-25	2098 - 2157	100	60 / 60	plus
JLOC1	JLOC1_36819.8	3693	8e-25	1762 - 1821	100	60 / 60	plus
JLOC1	JLOC1_36819.7	3357	8e-25	1426 - 1485	100	60 / 60	plus
JLOC1	JLOC1_36819.6	3483	8e-25	1543 - 1602	100	60 / 60	plus
JLOC1	JLOC1_36819.5	3808	8e-25	1877 - 1936	100	60 / 60	plus
JLOC1	JLOC1_36819.4	3272	8e-25	1332 - 1391	100	60 / 60	plus
JLOC1	JLOC1_36819.3	3971	8e-25	2031 - 2090	100	60 / 60	plus
JLOC1	JLOC1_36819.2	3754	8e-25	1814 - 1873	100	60 / 60	plus
JLOC1	JLOC1_36819.1	3520	8e-25	1580 - 1639	100	60 / 60	plus
Harvest35	U35_40613	645	3e-25	558 - 617	100	60 / 60	plus

Contig Sequence (645 bp)

>U35_40613 645 Hv_44K_v2
AAGTTCAACGACAAAGGATGCTTTGTTACTATCCGAGAGACAAGAGAAGGATGCAATGAA
GAAAGAACTTGCTGAAGCTGGAGAGAAAAATGGAGAGTTACTAATGAAAATTGAAGATAC
TAATGAAAAAATTGAACATCTTCAGAATACCATAATTAAGCTTGAAGAAGATGTAGCAGC
AAAAGATGTTTCATTAGAAGCAGCACGGCAAGAAAATGACTCAATCAGAAAATCTCTTAC
TGAAGCTCAAGAAAGAAACGAGGAATTACTCAGAAAAATTAGCGATAATGAGTACCGGAT
CCATTTACTTCAAGACACAGTGCAAAAGATTCAAGTAGATGCAATATCAAGATTGTCTTC
ATTTGTGATGGAAAAACAAGACAGTGATGTTGCCAAGAGAGCTCTTACTGAAGCTCATGA
AAGGAATGAAGATTTATTGAAGAGAAATGAAGACCTCCTTAACAGGAATGATGATTTGAT
TAAAAAAATTGAGGAGTCAGGCAAAGTTATAACTCACCTTCAGGAGTCCCTACAAAGAAT
TGAAGGAAAAGCAGCCAACTTAGAAGCTGAGAATCATGTTCTCCGTCAGCAAGCAATTGC
TACTCCACCTTCTACTGGCAAATCTCAACCCTCACGTTCAAAGAT

Homology of Contig U35_40613 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g46030.1	2160	9e-77	protein\|myosin head family protein, expressed
Brachypodium v1_2	Bradi2g48076.1	2262	1e-114
Arabidopsis v10	None