- Probe CUST_38262_PI390587928
- Source Contig U35_26129
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_38262_PI390587928 | Hv_44K_v2 | GTGGCGAAAATAGCAAGGAGGAAAATGCAAAACCATCTATTTACTGGGTTGATGCTCAAG | 919 | GeneList: grey MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.954 | 0.699 | 1.194 | 0.904 | 1.411 | 0.567 |
| Raw | 19.475 | 18.428 | 32.873 | 31.815 | 20.661 | 9.425 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK371393 | 3526 | 2e-24 | 1423 - 1482 | 100 | 60 / 60 | plus | ABC08786 ABC09080 |
| MLOC | MLOC_13948.8 | 2569 | 2e-24 | 1509 - 1568 | 100 | 60 / 60 | plus | ABC08786 |
| MLOC | MLOC_13948.9 | 2133 | 2e-24 | 986 - 1045 | 100 | 60 / 60 | plus | ABC08786 |
| MLOC | MLOC_13948.6 | 2476 | 2e-24 | 1380 - 1439 | 100 | 60 / 60 | plus | ABC08786 ABC09080 |
| MLOC | MLOC_13948.10 | 468 | 2e-24 | 100 - 159 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_13948.4 | 2568 | 2e-24 | 1461 - 1520 | 100 | 60 / 60 | plus | ABC08786 ABC09080 |
| MLOC | MLOC_13948.7 | 2500 | 2e-24 | 1446 - 1505 | 100 | 60 / 60 | plus | ABC08786 ABC09080 |
| MLOC | MLOC_13948.1 | 1805 | 2e-24 | 1413 - 1472 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_13948.2 | 2667 | 3e-21 | 1536 - 1589 | 100 | 54 / 54 | plus | ABC08786 |
| MLOC | MLOC_13948.5 | 2599 | 3e-21 | 1460 - 1513 | 100 | 54 / 54 | plus | ABC08786 |
| MLOC | MLOC_13948.3 | 2805 | 3e-21 | 1535 - 1588 | 100 | 54 / 54 | plus | ABC08786 ABC09080 |
| JLOC1 | JLOC1_9491.7 | 2573 | 8e-25 | 1397 - 1456 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9491.6 | 2659 | 8e-25 | 1441 - 1500 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9491.5 | 2551 | 8e-25 | 1375 - 1434 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9491.4 | 2639 | 8e-25 | 1463 - 1522 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9491.3 | 2617 | 8e-25 | 1441 - 1500 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9491.2 | 2681 | 8e-25 | 1463 - 1522 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9491.1 | 2615 | 8e-25 | 1397 - 1456 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC21482 | 982 | 3e-25 | 920 - 979 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_26129 | 982 | 3e-25 | 920 - 979 | 100 | 60 / 60 | plus |
Contig Sequence (982 bp)
>U35_26129 982 Hv_44K_v2 GCGGAGGCGGCGGCAGGGAGCAGCGGACGGTGCAGCGAGCAGGAGCACGCGCGCCTCGGA GAGAGGGACCAGCAGGAGTGGCTGAGCGGCGAGAGATTCCTCAGCGATTGCAAGAGGCGG GAGTCGCCGTTCCTCACCAGGCGGGAGAGATTCCGCATCGAGTTCCTGCGCCGCGTCGTG CCGTGGGAGAAGGGAAACCTCACATGGCAGAATTTCCCCTACTACGTCAATGAGAATGCA AGGCAGCTGCTGAGAGAGTGCACGTCATCCCACTTACGGCACAAGGGCATCACGTCAGAA TATGGCTCTCGGCTACCATCCTCTGGAGGGAGGATATTGCTCCAGAGCTTGCCAGGAACC GAACTCTACAGAGAGAGATTGGTAAGAGCTCTTGCACATGAGTTGCGGGTGCCGCTACTG GTCCTGGACAGCAGTATTCTAGCTCCATATGATTTTGGGGAAGATTATTCAGAAAGCGAG GAAGAAGATGAGCATGGTGAGTCAGAAGATGAAGGTTCAGAGTCTGAGATGGAAGATGAA GGCGATGAAGATTGGACAAGCAGCAATGAAGCCAAATCAGGTGAAAGTGATGACGAGGAT GCTCTAAAATCCGTGGAAGAACTCAAAAAGTCCGTGGATGATCTCAAGAAGCTGGCCCCG TGTACTATTGAGGAATTTGCAAAGAGAGTAGTTGGTGAAGAAGAAGGTACATCATCAGAA TCCCCAGAAACAGACAAGTCGCCAGAGGAAGATAAAAGGCCTTTCCAAAGGGGAGATAAA GTCAAGTATGTTGGTTCCTCTGCAGTTGTTGAAGCAGATCAGAGGACTCTGTCAAATGGG CAGCGTGGAGAAGTATATGAGATCAATGGGGATCAAGTAGCTGTCATATTTGACCCTCCT GCAGAGAAGCTGCATGATGGTGGCGAAAATAGCAAGGAGGAAAATGCAAAACCATCTATT TACTGGGTTGATGCTCAAGATA
Homology of Contig U35_26129 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g12160.1 | 974 | 4e-108 | protein|AAA-type ATPase family protein, putative, expressed |
| Brachypodium v1_2 | Bradi3g59247.2 | 968 | 1e-160 | |
| Arabidopsis v10 | AT3G19740.1 | 993 | 1e-71 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:6855944-6862930 REVERSE LENGTH=993 |