- Probe CUST_38256_PI390587928
- Source Contig U35_38109
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_38256_PI390587928 | Hv_44K_v2 | GCCGCCCGCCAACTTCAACCTCACCCAGCTCATCACCCGCTTCGCGTCCAAGAACCTCAC | 329 | GeneList: lightgreen MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.985 | 0.878 | 1.591 | 0.816 | 1.498 | 2.281 |
Raw | 41.539 | 50.386 | 90.817 | 65.914 | 43.336 | 75.537 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_68919.1 | 1978 | 2e-24 | 1072 - 1131 | 100 | 60 / 60 | plus | None |
JLOC1 | JLOC1_45647.1 | 1513 | 8e-25 | 694 - 753 | 100 | 60 / 60 | minus | |
JLOC1 | JLOC1_45646.1 | 1611 | 8e-25 | 706 - 765 | 100 | 60 / 60 | plus | |
Harvest21 | ABC33939 | 429 | 3e-25 | 330 - 389 | 100 | 60 / 60 | plus | |
Harvest35 | U35_38109 | 429 | 3e-25 | 330 - 389 | 100 | 60 / 60 | plus |
Contig Sequence (429 bp)
>U35_38109 429 Hv_44K_v2 GGCCCCGGCCTCATCCGCCTCTTCTTCCACGACTGCTTCGTCAGGGGCTGCGACGCGTCG GTGCTGCTGGACGACCCGACGGGCACGCCGGGAAACCAGACGGTGGAGAAGACGGCGCCG CCCAACTTCCCCAGCCTCCGGGGCTTCGGGGTCATCGACCGCGCCAAGCGCGTCGTGGAG CGCCGCTGCCCGGGGGTCGTCTCCTGCGCCGACATCGTCGCCTTCGCGGCCCGCGACGCG TCCCGCATCATGGGGGGCATAGTCTTCGCCATGCCCTCCGGCCGCCTCGACGGCCGCGTC TCCAACGCCACCGAGGCGGTCGCCAACCTGCCGCCCGCCAACTTCAACCTCACCCAGCTC ATCACCCGCTTCGCGTCCAAGAACCTCACCGCCGACGAGATGGTCACGCTCTCCGGCGCG CACTCCATC
Homology of Contig U35_38109 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | LOC_Os05g04470.1 | 333 | 4e-81 | protein|peroxidase precursor, putative, expressed |
Brachypodium v1_2 | Bradi2g37040.1 | 343 | 2e-77 | |
Arabidopsis v10 | None |