barSeed - Barley Seed Development Database

Probe CUST_38254_PI390587928

Source Contig U35_14151

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38254_PI390587928	Hv_44K_v2	AATAAGATCCAAGCGGAGATTGGGCAGAGCAGAAACCACTCAATTTTGGAGTCTGAACCT	1731	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71762.4	1371	2e-24	435 - 494	100	60 / 60	plus	ABC01387 ABC29482
MLOC	MLOC_71762.3	2100	2e-24	1618 - 1677	100	60 / 60	plus	ABC01387
MLOC	MLOC_71762.2	2406	2e-24	1889 - 1948	100	60 / 60	plus	ABC01387 ABC29482
MLOC	MLOC_71762.1	2495	2e-24	1828 - 1887	100	60 / 60	plus	ABC01387 ABC29482
JLOC1	JLOC1_47711.1	2603	8e-25	1817 - 1876	100	60 / 60	plus
Harvest21	ABC01377	2505	3e-25	1732 - 1791	100	60 / 60	plus
Harvest35	U35_14151	2504	3e-25	1732 - 1791	100	60 / 60	plus

Contig Sequence (2504 bp)

>U35_14151 2504 Hv_44K_v2
GAAGCCGTGACGGCACCGAACCCGGGGTCCGTGTGACCGCCGACGGCATCGTCCTCGTCG
TCTCTGCGCTCTCGAACGTTCCGCTCGCCTCCAAATAACCCACACCCGAGGCCGGGGAGG
CGGCCCATCACTTCCCCTTCCGTCGCTTCCTCCATCGGCCGCTTGCTCCGTGGTGCCCGA
CTCGGCGAGAGGCCTCTGCCTAGGAACAAAATGGATGAACAGAGAATAGCTCGAATATCG
GTCACTTGGAGAGGCAGGCAACTTGACGTTGATGCAGACCCAAGATGTACGATCAAGGAA
TTTGGGCAACTGCTCCAGGATTTGACTAATGTTAAACCAGAGACGTTGAAGCTCATAGTT
CCGCAATCTGCAAACAAAGGTTCCAAGCTGATCAGTCCATTTTCAGACACCCATTCAAGC
TTAACACTGAAAGAAGCCGCTATCAGTGAGGGTAAGCTTATTAGAATGATGGGTGTATTT
GAAGATGAAATTGAGGAAGTATCAGACAATGGAAAAAACCCAGATATGCGGATAATTGGA
TTTGAAGAGGAAGAACAGCGGCTGAGGCAACGATCTTCAGGCAGGCCCCGAGTTTCACTG
AAACTTCCACAGGGGCAATACATCTTCTGTGATTTTAGGACACTTCACTTACCTGGGGTT
GAGTTGAATCCACCACCTTCGGAAGCTCTGAAAAGAATGCACATGCTTGCATGTGACCCC
GGCATAATTGCGATCATGAACAAGCATAGATGGCGAGTGGGAATCATGACTGAAATGGCA
CCAGTGGGATATGTAGGTGTTAGTCCGAAATGCATTCTTGGCTTCAATAAGAACATGGGA
GAGGAGATATCCCTTCGCCTACGGACTGATGATTTGAAAGGATTTCGGAAATATGAAAGT
ATCAAGAAAACTCTGCTCCATGAACTTGCACATATGGTTCACTCTGAGCATGATGCCCTC
TTTTTCGCTCTTAATAAGCAGTTGAATGAGGAAGCTGCGTCCTTGGACTGGACCAAATCA
AGTGGACATGTGCTGAGTGGCCGCAAAATATTTGATTCCTATGAAGATGAGTTTGATTTA
GAACCGGAAGCTCATGTTGTCGGTCACAAGCTTGGAGGGCGATCGAGTTCACTGGCAAGT
TCCCGTGTGTTGCCAGGGGTAGCTGCTTATCAGCGTCTCTTGAGTGCATCATCAACAGAT
TTGGGGAGTTCCCACAGTAGTGTTACTAAATCTGTGGAGAGATATAATGTGCAAGGTACA
CAAGCAGAACCTGATCCGGATGATGCTGGTGAGGATTTTATTCTGGAAAATGTGAAGGCG
GAACCAGACCCAGATGATAATGACGCCATGCCTATTGATGTAACAATTGTGACATCAGGA
TCAGCAGGTTTTGTAGCATCTACAGAGCAGAATGCCAAGAAAAGCTCTGTTGGTTGCCTA
GAACCTGATCCTGATGATACTGCAGATGTTGACATGCTTAACAAGGAGATCGATGGTGAG
CATGATAATGAACCTGATCCTGATGATGGTACTAGTGAATTCGTCTTGGAATCTGGAAAC
ACGATGGAAGTGGAGATGGAGCTGAGAACTGACTCCACAGTTCTAAAATCGGAACCTGAT
CCTGATGACTCCTCTAGCTCTATTCAAAACCAGAAGGTGAGCATTGATGAGAAGCATATG
GGAGAGCCTGATCCGGATGCTAGTAGCTGTGGAGCTGCTTTGGCATCTGGAAATAAGATC
CAAGCGGAGATTGGGCAGAGCAGAAACCACTCAATTTTGGAGTCTGAACCTGACCCTGAC
GATCATGCTGCTAATTTAAAGAGCGATGAGCTGCAAAGAATAGAAGAGCCAGTGGCAGCC
CTCTGTTCGCGCCTCCAGAAGGCTATTGAAATGCTCCGGTCGCAAGCAACACCTTCAGAG
GCAGCCTCTGCACTTCAAACACTCTTCAAAATTATCAAGAATGTGATAGAGAACCCGAAC
GACATTCGTTATAGAAGATTGCGCAAGACCAATCCGCATTTCCAAAGGAGCGTGGTGAAT
TACAAAGCTGCGATGGAGGTCCTCGAGTTGATTGGCTTCTGCGAGGATGTCGTCTCGGAT
GAGATTGGGCGTGCGGAGACCTACCTGGTGCTGAAGAGGAACGATCCTGGGTTGCTGTGG
CTTGCGAAGTCCTCCCTTGAAGTATCCATGGCTTGATAAAACTTCCAGCTATTATTATAG
CCTGTCAGACTGTATACCTGTATATCATGACATTTCATCCCCTTTGTGCTGCGAAAATGG
TTTAGTGTGCTCTTGTGCGATGAGAATGAGAACATGAAACTGTGGTGTTGTTTGTCAGCT
TCACAATTGTATATCAAATATATGTGATTGCAGATAGACTCAAAAAAAAAAAAAAAAAAA
CTCGAGACTAGTTCTCTCTCTCCCGTAACCAGTGGCTGAGCTTCAGGTTTGCCCGACTAT
CCCTATGTGATTGTGAGCTGAGCTCGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14151 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g39150.1	670	0.0	protein\|expressed protein
Brachypodium v1_2	Bradi3g39600.1	712	0.0
Arabidopsis v10	AT5G35690.1	603	1e-168	CONTAINS InterPro DOMAIN/s: WLM (InterPro:IPR013536), PUB domain (InterPro:IPR018997), PUG domain (InterPro:IPR006567); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G55915.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr5:13865027-13868117 REVERSE LENGTH=603