barSeed - Barley Seed Development Database

Probe CUST_38251_PI390587928

Source Contig U35_14154

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38251_PI390587928	Hv_44K_v2	AGACGATAATGTTTCTCATTTTGCTATAAAAAAGTATAACGACTTGCTGATCTGGTTGGC	851	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358921	891	3e-22	828 - 886	98	59 / 60	plus	ABC01382
JLOC1	JLOC1_39362.2	1245	8e-25	971 - 1030	100	60 / 60	plus
JLOC1	JLOC1_39362.1	929	8e-25	655 - 714	100	60 / 60	plus
Harvest21	ABC01382	920	8e-21	852 - 903	100	52 / 52	plus	ABC01382
Harvest35	U35_14154	937	3e-25	852 - 911	100	60 / 60	plus

Contig Sequence (937 bp)

>U35_14154 937 Hv_44K_v2
GCCGGCTCTGTTTATCTCGCCCGTGGACTCTCCCTCTCTCGGAGACTGCGTAGTGGAACG
AGTAAACAGATCTGCTCTCTCCCTCTCTCTCGTGCGCGGCGGTACGATCCGAGATGGCGA
TGAGGGCGTGGAGGCGGAGCGCGGCGGCGAGGGCCCCGGCGCACCTGTGCCTGTGGCTGG
CGCTCGTCGCCGCCACCCTGGTGCTCGCCCAGGGGAAGAAGTCCAACCTGTCGGAGGTGA
CGCACAAGGTCTACTTCGACATCGAGATCGACGGCAAGCCCGCAGGTCGGGTTGTCATGG
GACTTTTTGGCAAGGCTGTTCCTAAAACTGCAGAGAACTTCAGAGCACTCTGCACAGGAG
AGAAAGGTATGGGCAACAGTGGCAAACCTCTCCACTACAAGGGGAGTTCATTCCACAGAA
TTATCCCCAGCTTCATGATCCAAGGAGGTGACTTCACCCTTGGCGATGGAAGGGGTGGTG
AATCAATCTACGGCACAAAGTTCGCCGATGAGAACTTCAAGCTCAAGCACACTGGACCAG
GCTACCTTTCCATGGCCAATGCTGGGAGAGATACCAATGGATCCCAGTTTTTCATCACCA
CTGTGACTACGAGCTGGTTGGATGGCAAGCACGTCGTGTTCGGCAAGGTGTTGTCTGGGA
TGGACGTGGTATACAAGGTTGAGGCTGAAGGCAAGCAGAACGGGACACCAAAGAGCAAAG
TTGTCATTGCTGACAGCGGAGAAGTGCCGCTGTGATGACCTGGAATGGTCTTTGGTGGAA
GCTACGGTGACTAGTTTTCGTCGTAGAGCCGTTATTAGCCGGTCTGTTTTCCTATACTTT
CGTGTGAATTTAGACGATAATGTTTCTCATTTTGCTATAAAAAAGTATAACGACTTGCTG
ATCTGGTTGGCAAAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14154 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g49480.2	221	1e-103	protein\|peptidyl-prolyl cis-trans isomerase, putative, expressed
Brachypodium v1_2	Bradi1g34750.1	216	2e-108
Arabidopsis v10	AT2G29960.1	201	8e-103	\| Symbols: CYP5, ATCYP5, CYP19-4 \| cyclophilin 5 \| chr2:12769183-12770528 REVERSE LENGTH=201