barSeed - Barley Seed Development Database

Probe CUST_38241_PI390587928

Source Contig U35_26131

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38241_PI390587928	Hv_44K_v2	GTTGTGGTTGTACTTCGTAGCTAGTTATATTGTAATAGGTAGTAAAGACTGTAACAGGTT	821	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_79267.2	1951	2e-24	1634 - 1693	100	60 / 60	plus	ABC23027 ABC25086 ABC47063
MLOC	MLOC_79267.1	1761	2e-24	1548 - 1607	100	60 / 60	plus	ABC23027 ABC25086 ABC47063
JLOC1	JLOC1_52809.2	923	8e-25	736 - 795	100	60 / 60	plus
JLOC1	JLOC1_52809.1	1722	8e-25	1535 - 1594	100	60 / 60	plus
Harvest21	ABC23027	940	3e-25	822 - 881	100	60 / 60	plus	ABC23027
Harvest35	U35_26131	940	3e-25	822 - 881	100	60 / 60	plus

Contig Sequence (940 bp)

>U35_26131 940 Hv_44K_v2
AAGCGGACGTTGATGTTGACCCCGAGGTGGCAACTGCCGGTCCCAAGAAGAGGACGTGCC
GCAAGTTCAGCTACCGCGGCGTGGACCTGCAAAGTTGCTGAATATTTGTATTCAGTTTGT
TTTATTGCTGCATTAGAATTACACCATTCGGCTTGTCTTGCTTTGTTGTAGACATGTCAT
TGTTAGAACTTTGTCTGCAGTTTTCCATCAATTGTTTCAGTGATTTTCCACTCAAAAATG
CATATGCATTGTTTATTCTATTTCAACTTCATGTTATGGTATGCTCACTTTTATTCTTTA
TGATTGCGTCATTTTACTGAATGTGTCAATAATATAGCTTTGGAGGATATGCGGATTCTA
TTGTGTCCTGCTAATTTTGCACTATATGATATGTAAATTCTCCCTACTAATTTAGAAGTA
ACATTTCTTAATGCTTAAGAAGAAATTTCAGCCATCATGCTATGATGCTATTGTTTTAAT
CAACCGTAGCTGTTTTGATGTGTTTCCTTGTGTTTGTAATTTGCTCATCGCCTGTTTTTC
CTTGTTCAAGTTTGAAGTATTTGGCCGCAAAATATTATGTGGAAATTATTTAAAACAAAG
ATGCATATGTTGTTTAAATATGGCCTGAGGCACTCGTGCTTCATTTTGAAATCATTTCAT
ATTTTTATATATGGTGTGTTTCGTTCCGCTGTTGCTGTTGTTGTTGCATAGGTTCGTAAT
AAAGCGATATAATATGTTGTGCTTGTTGTTCTTTTTGTTTTTGCAGAGACGCAATAATGG
ATGATGAGGAACCTAGTGATGGATATTTCTCAAGCGCCCTTGTTGTGGTTGTACTTCGTA
GCTAGTTATATTGTAATAGGTAGTAAAGACTGTAACAGGTTAATTTTGACTATCATATCA
AGAATTTATTTGTGTAACATTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_26131 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None