barSeed - Barley Seed Development Database

Probe CUST_38236_PI390587928

Source Contig U35_40427

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38236_PI390587928	Hv_44K_v2	TAACCAATTCAGCGGTCAAATTCCACCGCAATTCAATCGGCTTACTCGGTTAAGCACGTT	524	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72476.6	2559	2e-24	84 - 143	100	60 / 60	minus	ABC24376
MLOC	MLOC_72476.1	3000	2e-24	94 - 153	100	60 / 60	minus	ABC24376 ABC34597 ABC43043
MLOC	MLOC_72476.2	2955	2e-24	94 - 153	100	60 / 60	minus	ABC24376 ABC34597 ABC43043
MLOC	MLOC_72476.3	3514	2e-24	94 - 153	100	60 / 60	minus	ABC24376 ABC34597 ABC43043
MLOC	MLOC_72476.4	3347	2e-24	94 - 153	100	60 / 60	minus	ABC24376 ABC34597 ABC43043
MLOC	MLOC_72476.5	3041	2e-24	94 - 153	100	60 / 60	minus	ABC24376 ABC34597 ABC43043
MLOC	MLOC_72476.7	3168	2e-24	73 - 132	100	60 / 60	minus	ABC24376 ABC34597 ABC43043
MLOC	MLOC_72476.8	3357	2e-24	59 - 118	100	60 / 60	minus	ABC24376 ABC34597 ABC43043
JLOC1	JLOC1_48202.7	2747	8e-25	2605 - 2664	100	60 / 60	plus
JLOC1	JLOC1_48202.6	2843	8e-25	2701 - 2760	100	60 / 60	plus
JLOC1	JLOC1_48202.5	3235	8e-25	3093 - 3152	100	60 / 60	plus
JLOC1	JLOC1_48202.4	2929	8e-25	2787 - 2846	100	60 / 60	plus
JLOC1	JLOC1_48202.3	3321	8e-25	3179 - 3238	100	60 / 60	plus
JLOC1	JLOC1_48202.2	2800	8e-25	2658 - 2717	100	60 / 60	plus
JLOC1	JLOC1_48202.1	2213	8e-25	2071 - 2130	100	60 / 60	plus
Harvest35	U35_40427	660	3e-25	525 - 584	100	60 / 60	plus

Contig Sequence (660 bp)

>U35_40427 660 Hv_44K_v2
ATTTGGAACAAGTTGCAGCTTTTGGCCCAGCAGAGCAGCTCTATGTTTCTCTCCCCTTTT
GCGATGGCTGATGATACCAAGTTCATCCTTTTGTTTCTTCTCATGAGCAGCTCATCGTCG
TGTTCTGGTTTTGAACAAGATATCCAGTGCCTGAGGTCTGTACAACAATCAGTGATTGAT
CCCTTGGGCGTACTCAAATCCTCTTGAAACTTTGAAAATGTCACCAACGGTTACATATGC
CGCTTTACCGGTGTTGAATGCTGGCACCCCGACGAGAACAGGGTCCTCTCTCTGCGTCTC
GGCAACCTAGGACTCGAAGGCCCATTTCCTCAGGGTCGTCAAGATTGTACAAGCATGACC
GGCCTGGACCTGTCATAAAACAATTTTTCAGGACCAATCCCTCCCGACTTGTTACAGCTT
GTGCAGCCCCTGACATCTCTGGATCTTTCGTACAATAGTTTTTCGGGATCAATCCCACAG
AGTATCTCAGACATGACATATCTGAATCTCCTCAACCTCCAGAATAACCAATTCAGCGGT
CAAATTCCACCGCAATTCAATCGGCTTACTCGGTTAAGCACGTTCAATGTGGCGGGCAAC
TTGTCATCAGGGCCCATTCCTACTCTGTTAGAGACCTTCCCGGCTTCGAAATTTCTGGTA

Homology of Contig U35_40427 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g66820.1	280	2e-72	protein\|inactive receptor kinase At1g27190 precursor, putative, expressed
Brachypodium v1_2	Bradi2g25320.1	605	4e-71
Arabidopsis v10	None