barSeed - Barley Seed Development Database

Probe CUST_38234_PI390587928

Source Contig U35_26135

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38234_PI390587928	Hv_44K_v2	ACAAACAAGAACAAGTGCATCACCTTGGACAAGCAGATCGATTACTACTGTGGCGTGTAC	526	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.109	1.206	1.341	1.238	0.215	0.216
Raw	131.104	80.189	75.344	102.756	6.172	6.053

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44661.1	1355	2e-24	677 - 736	100	60 / 60	minus	None
JLOC1	JLOC1_28958.1	1279	8e-25	537 - 596	100	60 / 60	plus
Harvest21	ABC25021	627	3e-25	527 - 586	100	60 / 60	plus
Harvest35	U35_26135	627	3e-25	527 - 586	100	60 / 60	plus

Contig Sequence (627 bp)

>U35_26135 627 Hv_44K_v2
GGTGCGGCCTATAAACTGTTGTGAGCCAAACCTCGTGACCTGAACTCTCCTAACACGTTA
AGTACCACTACCTTTCTAAAGTAATATAAAATTGTTTAGTTCACTAAACTAGTGACCTAG
ACGACCTTATCGCGCTACTCGAATGCTTATACATTTGAGATAGTTAGCAATGCTGGGTGC
CAGAGTAGTCGCTTGTTGCTCCTTGTCCATCATGGCTTTCATGGCGGCCGCGGTGAATGC
GGGGTCCGTGCCGGCGGTGTACGTGTTCGGAGACTCTTTGGCGGATGTGGGAAACAACAA
CCATCTGCTGACGCCGATCATGGCGGACTTCTCGCACAACGGTATCGATTACCCGGGGAG
GAAGGCCACCGGTCGCTTCAGCAACGGCAAGAACTCCGCCGACTTCCTAGCCGACAAGCT
CGGGCTAGCAACATCGCCACCGTACCTGGCCCTGTCCTCAAGCAGCAATGCCAACTACGT
GAACGGCGTCAACTTCGCTTCCGGTGGCGCAGGAGTCTCTAACGCCACAAACAAGAACAA
GTGCATCACCTTGGACAAGCAGATCGATTACTACTGTGGCGTGTACGCGTCCCTGGCGCG
CAGCCTCGGGCAGGCCGATGCCGCAAC

Homology of Contig U35_26135 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g15547.1	365	7e-75
Arabidopsis v10	None