barSeed - Barley Seed Development Database

Probe CUST_38229_PI390587928

Source Contig U35_38110

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38229_PI390587928	Hv_44K_v2	TTACAGGCAATCGATCGACATTTTGAGCAGCGTGCAGTCGCCGAGCCTGGGTTTTCTCGG	286	GeneList: thistle1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.377	1.292	0.583	0.476	1.090	0.971
Raw	21.585	11.906	3.032	3.157	2.779	2.789

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56385.3	634	7e-23	269 - 325	100	57 / 57	plus	None
MLOC	MLOC_56385.2	2360	7e-23	381 - 437	100	57 / 57	plus	ABC18853
MLOC	MLOC_56385.1	2405	7e-23	783 - 839	100	57 / 57	plus	ABC18853
MLOC	AK365354	2120	3e-21	282 - 338	98	56 / 57	plus	ABC18853
JLOC1	JLOC1_36460.1	2309	4e-23	511 - 567	100	57 / 57	plus
Harvest21	ABC33940	413	3e-25	287 - 346	100	60 / 60	plus
Harvest21	ABC17712	517	1e-23	248 - 304	100	57 / 57	plus
Harvest35	U35_38110	413	3e-25	287 - 346	100	60 / 60	plus
Harvest35	U35_6272	546	6e-22	278 - 334	98	56 / 57	plus

Contig Sequence (413 bp)

>U35_38110 413 Hv_44K_v2
GCCCATCCCATCCCATCCCTGTCTTGTCTGCTCTCCATCTGCTCTGCTCTGCTCTGCTTC
TGGTGCGGGAGGCGATGAAGAGCCTGCTGGGGGAGGAGCGCATCTTCATCATCGAGAGCG
ACGACGACCACGACGAGGAGGACCCCACCCACAGGGACGGCGCCGGCGGCGGCCACGGCG
ACGACGGCTCCTCGTCGGACTCGTCGTCGTGCGCCAGCCCGCGCGGAGGGAGCGGCGGCG
GCGGCGACAGCCAGCCCAACTCCTACACCAACCAATGGCCGCATAGTTACAGGCAATCGA
TCGACATTTTGAGCAGCGTGCAGTCGCCGAGCCTGGGTTTTCTCGGGACCCCGACGCTCA
GCAGGCTATCCAACTCCTTCCTCAACAGCTCCTTCCTCAACAACTCGTTCCGA

Homology of Contig U35_38110 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None