barSeed - Barley Seed Development Database

Probe CUST_38225_PI390587928

Source Contig U35_38115

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38225_PI390587928	Hv_44K_v2	CAACATTGGCCTGGGTTCAGTGATCAAAGGATGGGATGAGGGAGTTATGGACATGCAATT	257	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.294	0.430	1.076	1.741	1.104	1.545
Raw	4982.990	11195.287	25128.500	62991.433	14241.800	21823.500

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359488	808	2e-24	441 - 500	100	60 / 60	plus	ABC02778 ABC29305
MLOC	MLOC_37004.2	576	2e-24	205 - 264	100	60 / 60	minus	ABC02778 ABC29305
MLOC	MLOC_37004.1	874	2e-24	214 - 273	100	60 / 60	minus	ABC02778 ABC29305
JLOC1	JLOC1_23899.1	896	8e-25	369 - 428	100	60 / 60	plus
Harvest21	ABC33952	317	3e-25	258 - 317	100	60 / 60	plus
Harvest21	ABC02778	902	3e-25	473 - 532	100	60 / 60	plus	ABC02778
Harvest35	U35_38115	317	3e-25	258 - 317	100	60 / 60	plus
Harvest35	U35_843	855	3e-25	471 - 530	100	60 / 60	plus
Harvest35	U35_842	753	1e-23	63 - 123	98	60 / 61	plus

Contig Sequence (317 bp)

>U35_38115 317 Hv_44K_v2
CTCTTATCCGCGCCACCTACGTTCCCGCTCGAGATGCGGGCAGAGCTGCTGCTGCTCGGC
GGCAAGGTGTCCACCGCAGCGGCGGCGTCTGGCGCCGCCGCCGCGTCCTTGGCGGGAGCT
GGACGCTGCGTGGCCGGCGGGCGGCGACTCGCGCCCGTGCAGCCGGCGGCGCTGCAATGG
CGGCATAGTAGCAAGGACGGTGATCTGTCCAAGAAGTTTTGGAGTACCAAGGATCCTGGG
CAGCAGCCATTCGCTTTCAACATTGGCCTGGGTTCAGTGATCAAAGGATGGGATGAGGGA
GTTATGGACATGCAATT

Homology of Contig U35_38115 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None