barSeed - Barley Seed Development Database

Probe CUST_38219_PI390587928

Source Contig U35_14162

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38219_PI390587928	Hv_44K_v2	TCTTTTGATGTGCTGAGAAAAATTATTGCTACCCTTATCCTTCTCTCCAAACTTCTAGAC	254	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71762.4	1371	7e-23	741 - 801	98	60 / 61	plus	ABC01387 ABC29482
Harvest21	ABC01387	706	3e-25	393 - 452	100	60 / 60	minus	ABC01387
Harvest35	U35_14162	708	3e-25	255 - 314	100	60 / 60	plus

Contig Sequence (708 bp)

>U35_14162 708 Hv_44K_v2
CTGAACCTGACCCTGACGATCATGCTGCTAATTTAAAGAGCGATGAGCTGCAAAGAATAG
AAGAGCCAGTGGCAGCCCTCTGTTCGCGCCTCCAGAAGGCTATTGAAATGCTCCGGTCGC
AAGCAACACCTTCAGAGGCAGCCTCTGCACTTCAAACACTCTTCAAAATTATCAAGAATG
TGATAGAGAACCCGAACGACATTCGTTATAGAAGATTGCGCAAGGTATGCTTGGCTTCTG
TATGTTATGCTTTGTCTTTTGATGTGCTGAGAAAAATTATTGCTACCCTTATCCTTCTCT
CCAAACTTCTAGACCAATCCGCATTTCCAAAGGAGCGTGGTGAATTACAAAGCTGCGATG
GAGGTCCTCGAGTTGATTGGCTTCTGCGAGGATGTCGTCTCGGATGAGATTGGGCGTGCG
GAGACCTACCTGGTGCTGAAGAGGAACGATCCTGGGTTGCTGTGGCTTGCGAAGTCCTCC
CTTGAAGTATCCATGGCTTGATAAAACTTCCAGCTATTATTATAGCCTGTCAGACTGTAT
ACCTGTATATCATGACATTTCATCCCCTTTGTGCTGCGAAAATGGTTTAGTGTGCTCTTG
TGCGATGAGAATGAGAACATGAAACTGTGGTGTTGTTTGTCAGCTTCACAATTGTATATC
AAATATATGTGATTGCAGATAGACTCATAAACATCTTTTCTGGGGCTA

Homology of Contig U35_14162 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g39150.1	670	3e-59	protein\|expressed protein
Brachypodium v1_2	Bradi3g39600.1	712	4e-59
Arabidopsis v10	None