barSeed - Barley Seed Development Database

Probe CUST_38216_PI390587928

Source Contig U35_14166

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38216_PI390587928	Hv_44K_v2	TGATGATCGTTCTAGCTCCGATAACAATTCAAGTCGTAGCAACCATGCACCTCCTCAAGT	1140	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.291	1.291	1.280	0.966	0.313	0.210
Raw	2270.517	3684.372	3148.613	3781.437	424.362	312.965

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66756.1	2272	2e-24	361 - 420	100	60 / 60	minus	ABC03919 ABC03920
MLOC	MLOC_66756.2	1201	2e-24	113 - 172	100	60 / 60	minus	ABC03919 ABC03920
MLOC	MLOC_66756.3	1642	2e-24	113 - 172	100	60 / 60	minus	ABC03919 ABC03920
JLOC1	JLOC1_44034.1	2749	8e-25	1423 - 1482	100	60 / 60	minus
Harvest21	ABC03919	1387	3e-25	1141 - 1200	100	60 / 60	plus	ABC03919
Harvest35	U35_14166	1387	3e-25	1141 - 1200	100	60 / 60	plus

Contig Sequence (1387 bp)

>U35_14166 1387 Hv_44K_v2
CCCCATTCCGCCGCCTCTCTTCTCTCTTCTCTCCTCACTCCCTCTCGACCGCACCGCAGA
GATGGCGTCCGACGGCAGCGGCGTTGTCACCGTGTACGGCAGCGGCAACAACGGCGCCGG
TACGCAGCTGGAGCCCAAGTCATCCCCTTTCTCTGTTAAGGTGGGCCTGGCCCAGATGCT
CCGCGGCGGCGTCATCATGGACGTCGTCAACGCCGAGCAGGCGCGCATCGCCGAGGAGGC
CGGCGCCTGCGCCGTCATGGCGCTCGAGCGCGTCCCCGCTGACATCCGCGCCCAGGGCGG
CGTCGCCCGCATGTCGGACCCGGGCCTCATCCGCGAAATTAAGCGCGCCGTCACCATCCC
GGTCATGGCCAAGGCCCGCATCGGGCACTTCGTCGAGGCCCAGATCCTCGAGTCCATCGG
CGTCGACTACGTGGACGAGAGCGAGGTCCTCACACTCGCCGACGACGCCCACCACATCAA
CAAGCACAACTTCCGCGTCCCCTTCGTCTGCGGCTGCCGCAACCTGGGCGAGGCCCTCCG
CCGCATCCGCGAGGGCGCCGCCATGATCCGCACCAAGGGCGAGGCCGGCACCGGCAATGT
CGTCGAGGCCGTCCGCCACGTCCGCTCCGTCATGGGCGACGTCCGTGCCCTCCGCAGCAT
GGACGACGACGAGGTATTCTCCTATGCCAAGAGCATTGCCGCACCCTACGACCTCGTCAT
GCAGACCAAGCAGCTCGGCCGCCTGCCCGTCGTCCAGTTCGCCGCAGGCGGGGTGGCCAC
GCCGGCCGATGCGGCCCTCATGATGCAGCTCGGCTGCGACGGTGTCTTCGTCGGCTCCGG
TATCTTCAAGAGCGGGGACCCCGCGCGCCGCGCACGCGCCATCGTGCAGGCCGTCACCCA
CTACAGCGACCCTAATGTGCTCGCCGAGGTCAGCTGCGACCTGGGCGAGGCCATGGTGGG
CATCAACCTCTCCGATCCCAAGGTCGAGCGCTTTGCGGCGCGCTCCGAGTGATCTTTCTT
GTTGTTGGCCACCATATCAACACCTGCCATCCCCCAAAATAATACTCCATGGATCAATGA
TATAAGGACAAAAAAACACAAGTAGACGCGATTCCTAGTTATTATGATATGATTTCTTCA
TGATGATCGTTCTAGCTCCGATAACAATTCAAGTCGTAGCAACCATGCACCTCCTCAAGT
CAGTAAGTCGGTCAGTCGCTCGCTCTATATATGTACACACATGTTGGCGTCTTCCATTTC
ATTTCTCTTGTTGTTAACACAAGTTAAGTATCCATCCATCCTTTTTCCTCAAAAAAAAAA
AAAAATACTCTTGCTACTATGCATTTTGCTGTTCCAGATTCGTTGTCGTTAAAAAAAAAA
AAAAAAA

Homology of Contig U35_14166 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g01020.1	319	protein\|SOR/SNZ family protein, putative, expressed
Brachypodium v1_2	Bradi1g59870.1	314
Arabidopsis v10	AT5G01410.1	309	\| Symbols: PDX1, ATPDX1.3, RSR4, PDX1.3, ATPDX1 \| Aldolase-type TIM barrel family protein \| chr5:172576-173505 REVERSE LENGTH=309