barSeed - Barley Seed Development Database

Probe CUST_381_PI415269222

Source Contig TA44698_4513

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_381_PI415269222	Hv_44K_v2	AGTATGGAATATCTGTAGGCAAACCCAGCTCAAACATTATCATCCAGCGGGTTTCAGGCA	654	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62791.2	1667	2e-24	915 - 974	100	60 / 60	plus	ABC12694
MLOC	MLOC_62791.1	1658	2e-24	702 - 761	100	60 / 60	minus	ABC12694
MLOC	MLOC_62791.3	1876	2e-24	645 - 704	100	60 / 60	minus	ABC12694
JLOC1	JLOC1_41113.4	1788	8e-25	945 - 1004	100	60 / 60	plus
JLOC1	JLOC1_41113.3	2009	8e-25	1166 - 1225	100	60 / 60	plus
JLOC1	JLOC1_41113.2	1719	8e-25	876 - 935	100	60 / 60	plus
JLOC1	JLOC1_41113.1	1400	8e-25	557 - 616	100	60 / 60	plus
Harvest21	ABC12694	1434	3e-25	658 - 717	100	60 / 60	plus	ABC12694
Harvest35	U35_19762	1434	3e-25	658 - 717	100	60 / 60	plus

Contig Sequence (886 bp)

>TA44698_4513 886 Hv_44K_v2
CGGCACGAGGGTTCGGGGCCGTGGGCGACGGGGTCACGTCCAACACGGCGGCGTTCCAGC
GCGCCGTGGCTGCTCTGGAGGAGAGGGGCGGCGGCGGCGGCGCCAGGCTGGAGGTGCCGG
CGGGGCGGTGGCTCACGGGGAGCTTCAACCTCACCAGCCGCTTCACGCTCTTCCTGCACC
ATGGCGCGGTCATCCTCGGCTCCCAGGATCCAGAAGAGTGGCCTCTCATTGCACCATTGC
CGTCTTACGGGCGCGGAAGGGAAAGATTAGGACCGCGCCACATTAGCCTCATTCATGGAC
AAGACCTAAATGATGTTGTTATTACTGGTAGCAATGGGACCATAGATGGCCAGGGCAGGA
TGTGGTGGGAGCTGTGGTGGAACCGGACTCTGAACCACACAAGAGGTCATCTCATCGAGC
TCGTCAATTCAACCAACGTCCTGATCTCCAATGTCACCCTACGCAACTCCCCGTTTTGGA
CAGTGCATCCGGTCTACTGCAGAAACGTGGTGATAAAGGATTTGACTATACTAGCTCCCC
TGAATGCTCCAAACACCGATGGCATCGATCCAGACTCAAGTTCAGAAGTTTGTATCGAGG
ACTGCTATATTGAAAGTGGGGATGACCTGGTTGCTGTCAAGAGTGGCTGGGATCAGTATG
GAATATCTGTAGGCAAACCCAGCTCAAACATTATCATCCAGCGGGTTTCAGGCACCACAC
CTACGTGCTCCGGTGTGGGTTTCGGAAGCGAGATGTCGGGTGGGATATCAAACGTGCTTG
TCCGCGACCTCCACATATGGAACTCCGCTTCCGCAGTAAGGCTCAAGACCGATGTGGGGC
GCGGCGGGTACATAACCAACATCACCATCGCCAACGTGACGATGGA

Homology of Contig TA44698_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g01600.1	483	0.0	protein\|polygalacturonase, putative, expressed
Brachypodium v1_2	Bradi3g13260.1	486	0.0
Arabidopsis v10	AT4G33440.1	475	8e-154	Pectin lyase-like superfamily protein \| chr4:16092020-16094732 FORWARD LENGTH=475