barSeed - Barley Seed Development Database

Probe CUST_3819_PI390587928

Source Contig U35_40618

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3819_PI390587928	Hv_44K_v2	TACCCCCTCCGTCCCAAATTATAAGAGCATTTTTTATACTATGATAGTGTAAAAAACGCT	654	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371630	1707	2e-24	1313 - 1372	100	60 / 60	plus	ABC46474
MLOC	MLOC_58351.3	437	2e-24	164 - 223	100	60 / 60	plus	None
MLOC	MLOC_58351.1	1716	2e-24	1388 - 1447	100	60 / 60	plus	ABC46474
JLOC1	JLOC1_37903.1	1234	8e-25	887 - 946	100	60 / 60	plus
Harvest35	U35_40618	719	3e-25	655 - 714	100	60 / 60	plus

Contig Sequence (719 bp)

>U35_40618 719 Hv_44K_v2
GTCTTGATAAGTGGGGCGAGCCGTGCTCTCCTCTTCATGTTGGGTCCCTTCCACTCTGGG
ACGAAATGGCCCCTGTCTTGGTGGAAGACGCACTTTACATCAAGCTCATGTATTTCCAAG
ATGATCCCATTGCAATTCTCAAGTACGACTTGGGATCTAACTGCTTATCACTCATTGATG
CACCGTTGGCTGGGTCTATCCTTCGCAATGCCGCTATCCTCATGGCGATGGAGGATGGCA
GTCTGGGGTTTGCACATGTGGACAAGTTAACCCTCCACTTGTGGTCAAGACAGAGGAGCT
CCGACGGAATTGTGTCATGGACTCAACGCACAGCCGTCAGTCTTAGTAACCATCTCCCCA
TTGAAAATCCCAATGAAAGACTTAGACTGATTGGATCTGTGGAGGGCAGTGATATCATTT
TCGTGACCATGGGCCTTGACATCTACCAGCTTAATCTCAAGACATTTCGGTGGAAGAAGC
TGCAAAAGAGAGAAAAGCTTCGTGCTTTGTTTCCGTACATGAGCTTCTACAATCCACAAG
AAAGAGGGATCCCCGGTGATGTGGCGCATTGACAATGTATGGTTGAGTATGCTTGCGTAN
GAGGCCAGTCTAATCGACAACAAATTGGAGGCTACAAGGGTCGTCACTATCTAGTACCCC
CTCCGTCCCAAATTATAAGAGCATTTTTTATACTATGATAGTGTAAAAAACGCTCTTAT

Homology of Contig U35_40618 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None