barSeed - Barley Seed Development Database

Probe CUST_38198_PI390587928

Source Contig U35_38120

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38198_PI390587928	Hv_44K_v2	GATGGAGTACCATAGATTTCATGTTGGAATGCTTGTTAAGGAATTTGTTGAGTACTTGAG	73	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.329	1.820	1.161	0.875	0.324	0.404
Raw	305.480	660.231	364.651	421.868	55.681	76.159

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5498.1	1343	2e-24	704 - 763	100	60 / 60	plus	None
JLOC1	JLOC1_3538.1	965	8e-25	704 - 763	100	60 / 60	plus
Harvest21	ABC33958	735	3e-25	74 - 133	100	60 / 60	minus
Harvest35	U35_38120	735	3e-25	74 - 133	100	60 / 60	minus

Contig Sequence (735 bp)

>U35_38120 735 Hv_44K_v2
TGGGTACCGGGGCCCCCCCTTTTTTTTTTTAACACAAAAACATCTTATATTGAGTTACAA
AGGGATAATAATACTCAAGTACTCAACAAATTCCTTAACAAGCATTCCAACATGAAATCT
ATGGTACTCCATCGGTTTTGAGAATCTACATGCAGTGTAACTAAATTTACTCAACTAAAA
AATCATACTAGCCAGTTGAATGCACAAGCTAAATCCACCGTCCAAACGGCAAACCATGTT
TCAGTTGATATAGCCACCTGGTCAGTTGAATGCACAAGCTTAACTCCTGAAGATCTTACC
ACAATGCTACCTTTCTTGTTTACACGCAATACAACAATCGTTTCTATGCTGCCAAGGTAC
AAGTATAATTTTCTCATCTTTAAACACCAGTTAAACTATATTCATTCAAAAAGAAAGTGG
CAAGAATCACAAATCATGCCACCACCGGATTTATTTATTTTTTGAAACAACCCTTTGAGG
AAAAGAGAAAAATGAGCAAACTGAGAAACCCACAAAACCAAAAGCCTGCACGACTCCATT
TGCTACTCATTCCCGGGTTCTCATGTGGGAGATCAGAATAAAACATACCTCCCGCTCATG
GCTCCTTGCAATTCATGACATGCCAAATGGTTTTATATTTTCGGTTAACCTATCTTGATG
GTTTCTTACGGGTAAGGATCTCCTCTTCTTTGAGGCGCTGTTGAAACCTTGCTAAGCGTG
CCTGGAGACTGACCA

Homology of Contig U35_38120 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None