barSeed - Barley Seed Development Database

Probe CUST_38195_PI390587928

Source Contig U35_38123

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38195_PI390587928	Hv_44K_v2	GTGTGTTGTATGATTTAAATGTGAATGTGAGTGGCCCTGTAGACACTGTACTGCAAAAAA	11	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65109.9	1905	3e-22	1789 - 1844	100	56 / 56	plus	ABC33961
MLOC	MLOC_65109.1	3679	3e-22	2686 - 2741	100	56 / 56	minus	ABC33961
MLOC	MLOC_65109.2	4126	3e-22	2264 - 2319	100	56 / 56	minus	ABC33961
MLOC	MLOC_65109.3	4021	3e-22	1963 - 2018	100	56 / 56	minus	ABC33961
MLOC	MLOC_65109.5	4083	3e-22	1903 - 1958	100	56 / 56	minus	ABC33961
MLOC	MLOC_65109.6	4181	3e-22	1990 - 2045	100	56 / 56	minus	ABC33961
MLOC	MLOC_65109.8	3140	3e-22	1153 - 1208	100	56 / 56	minus	ABC33961
MLOC	MLOC_65109.4	4253	3e-22	2289 - 2344	100	56 / 56	minus	ABC33961
MLOC	MLOC_65109.7	4007	3e-22	1568 - 1623	100	56 / 56	minus	ABC04805 ABC33961
JLOC1	JLOC1_42819.4	3811	1e-22	1926 - 1981	100	56 / 56	plus
JLOC1	JLOC1_42819.3	3676	1e-22	1791 - 1846	100	56 / 56	plus
JLOC1	JLOC1_42819.2	3563	1e-22	1678 - 1733	100	56 / 56	plus
JLOC1	JLOC1_42819.1	3617	1e-22	1732 - 1787	100	56 / 56	plus
Harvest21	ABC33961	254	3e-25	12 - 71	100	60 / 60	minus	ABC33961
Harvest35	U35_38123	254	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (254 bp)

>U35_38123 254 Hv_44K_v2
TTTTTTTTTTTTTTTTTGCAGTACAGTGTCTACAGGGCCACTCACATTCACATTTAAATC
ATACAACACACATGCCAAAAAGCAGGAGGTTAGCATGGTTATAAATTTGTACGGCAACCA
GTTTTAACTCGAGAGTTGAGTGTTGTCGTTCTGGATTATTAGGGTTAGTACACATCTATG
CCTGCAAAGCTCCGAAGTACTCTAGGATTCTAGGCGACGAGCACCCGCTTATGTTTGTGA
ATTCCACACACAGG

Homology of Contig U35_38123 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None