barSeed - Barley Seed Development Database

Probe CUST_38191_PI390587928

Source Contig U35_14170

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38191_PI390587928	Hv_44K_v2	CAGGTGTTTTATTCGCTCCCTGGTTGTGCAACTTTCTTTTTTGGTAAAATACTCTAATTT	2255	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.363	1.437	1.095	0.975	0.462	0.408
Raw	5662.460	9296.633	6256.247	8675.620	1456.023	1388.883

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_18720.1	1980	4e-23	1904 - 1963	98	59 / 60	plus
Harvest21	ABC04013	2364	3e-25	2256 - 2315	100	60 / 60	plus	ABC04013
Harvest35	U35_14170	2339	3e-25	2256 - 2315	100	60 / 60	plus

Contig Sequence (2339 bp)

>U35_14170 2339 Hv_44K_v2
AGCCCCTTCCTCCTCGCCGCGGAGCTCCCAAATCCCGCACCCTAGGAGGCGACCCTACCG
CGCGCGAGAGAGCGGGTCACGAGCCTGTAGCGACGGCGGCTGCGGTCACCGGCCGCAGAG
ACAGCGGGCGAGATGACGGACGGCCACCTCTTCAACAACATCTCCCTCGGCGGCCGCGTC
GGCAACAACCCTGGTCAGTTTAGGCTTTATTCGGGAGGGCTTGCATGGAAGAAGCAAGGT
GGAGGAAAGACTATTGAGGTTGATAAAGCTGATATAGTTTCTGTGACGTGGATGAAAATC
CCCAGATCTTATCAGCTTAGTGTTGGGACCAAAGAGGGCATCCGGTACGTGTTCAAAGGC
TTCCGTGAACAGGATGTTAGTAACCTTACTAACTTCATACAAAAGAACACGGGAACCACA
CCAGAGGAGAAGCAGCTTTCTGTTAGTGGACATAATTGGGGCGCGGTCGACATCAATGGC
AATATGCTTAGCTTTAATGTTGGCTCGAAGGAAGCATTTGAAGTCTCTCTATCAGATGTA
TCACAAACTCAGTTGCAAGGAAAAACAGATGTTGTTCTTGAGTTCCATGTTGATGATACT
ACAGGGGCTAATGAGAAAGATTCGCTGATGGATTTAAGTTTTCATGTACCAACTTCAAAT
ACACAATTCCTTGGAGATGAGGAACGTCCTTCGGCTCATATTTTTTGGCAGAAAATCTTG
GCTATAGCTGATGTTGGCTCATCAGAAGAGGCTGTTGTCTCATTGGAGGGAATTGCCATT
CTTACCCCAAGAGGTCGATACACTGTTGAGCTTCATATGTCATTCTTGCGTCTCCAAGGA
CAAGCTAATGATTTCAAAATCCAGTATAGCAGTATTCTTCGGCTCTTTGTTTTGCCAAAG
TCAAACAACCCTCATACCTTTGTGGTCATCACACTTGATCCGCCAATTCGCAAAGGACAA
ACATTATATCCCCACATTGTTATTCAGTTTGTGACAGAGAATGTAGTTGAGAAGGAGCTG
TCATTAAGTGAGGAGGTTTTGGCTGAAAAGTACAAGGACAGGCTGCAGAGTTCTTACAAT
GGTCTAGAACATGAGGTATTCTCCAAAATCCTTCGTGGCCTGTCTGGTGCTAAAGTGACG
AGGCCAAGCACATTCCGCAGTTGTCAAGATGGATATGCCGTGAAATCATCACTTAAAGCT
GAAGATGGATTGCTGTATCCTCTTGAAAAAGGCTTTTTCTTTTTGCCAAAGCCCCCGACA
CTCATTCTGCATGAGGAGATTGAGTATGTTGAATTTGAGCGCCATGGTGCTGGTGGTGCT
AGCATGTCATCTCACTATTTTGATCTCCTGGTCAAGCTAAAGAATGACCAAGAACATCTC
TTCAGAAATATACAAAGGAATGAATACCATAACCTCTTCAACTTCGTAAGTGGTAAGAAT
TTGAAAATCCTGAATCTTGGAGAAGATGGCCAAGATAGAACTGGTGCCGTCGCGGCTGCT
CTTCAGAGCACTGATGATGACCCTGTTGATCCACATTTGGAGCGAATTAAAAATCAGGCT
GGTGATGAAGAAAGTGATGAAGAGGACGAAGATTTTGTGGCGGACAAGGATGATAGCGGA
TCCCCTAGTGATGATTCTGAAGAGGGTTCTGATGCCAGCATAAGTGATGGAGAAAAGGAG
AAATCTTCCAAAAAGGAAGCTAGTAGCTCAAAGCCACCTGTGAAGAGGAAACCAAAGAGT
GTGGATGTGGAAAGTTCAGAGAAGAGAAAGCCGAAGAAGAAGAAGACGAAAGATCCCAAT
GCCCCCAAAAGAGCAATAGCACCATTCATGTACTTCTCAAAGGCTGAGCGAGCTAATTTG
AAGAACATCAACCCCGAACTCAGCACCACAGATATTGCAAAGAAGCTTGGAGAGAAATGG
CAAAAGATGTCAGCTGAGGAGAAGCAGCCATACCTTGAGCAGTCCCAAGTGGATAAGAAA
CGCTATGCAGAGGAGACTGCTGCTTACCGCGGTGCTGGTGCAGCTCCTGTAGACGTGGAC
TCTGCAGATGGATCGTCCGATTGAATTGGAAGATTGGCCGGTTGCCGAAAGGAACATACT
TTCGAGTCATGGTACAAGTAGACATCCGATCTATCTTGGCTGTAGTAACTTGGGAGGTGT
GATCCTTACGTTTCTGAGTTAACAAAGAACAGTTAATGGATATGTGTAGGTTTCCAAGGT
ACTGTTGCTTTGCTACTAACTGTCAGCACCCGCGACAGGTGTTTTATTCGCTCCCTGGTT
GTGCAACTTTCTTTTTTGGTAAAATACTCTAATTTTCATTGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_14170 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g08970.1	641	protein\|SSRP1-like FACT complex subunit, putative, expressed
Brachypodium v1_2	Bradi2g33580.1	644
Arabidopsis v10	AT3G28730.1	646	\| Symbols: ATHMG, SSRP1, NFD, HMG \| high mobility group \| chr3:10784954-10788498 FORWARD LENGTH=646