barSeed - Barley Seed Development Database

Probe CUST_38186_PI390587928

Source Contig U35_16629

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38186_PI390587928	Hv_44K_v2	TATGAGCGCGTTGATCGACTTCAAAAAGAGTCATTCAAGCAATTGTAACTGTGATTTTTT	2237	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.125	1.082	1.317	1.035	0.307	0.271
Raw	53.524	82.054	84.939	105.412	10.649	10.472

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357122	2403	2e-24	2271 - 2330	100	60 / 60	plus	ABC06956
MLOC	MLOC_23953.1	3204	2e-24	1677 - 1736	100	60 / 60	minus	ABC06956
JLOC1	JLOC1_16518.1	2087	8e-25	91 - 150	100	60 / 60	minus
Harvest21	ABC06956	1511	3e-25	1416 - 1475	100	60 / 60	plus	ABC06956
Harvest35	U35_16629	2333	3e-25	2238 - 2297	100	60 / 60	plus

Contig Sequence (2333 bp)

>U35_16629 2333 Hv_44K_v2
AAGTCGCGTCGAACCCTTCCTACCCACCCATACCCTCGCCGCAACGCCGACAAGCCCTAG
CTAGGGTTTTGCTCTTTCCCTACCCCCGTCCCCGCTCATGGATCCCTTCTCGAAGAAGCG
CAAGCCGGACGAGAACGGCGCGGTCGCCGCCTCCCCCGCCGTCGGTGCTGCCACGCTCGG
GCTCACGCGCGATGACGTCCTGCGTCTCCTCGACCCGCTGTCCCGCGACCAGCTCGCCGA
TATCGCCGCCGCCGCGGCGCTCGCCTCCGGGGTTGCGCTCGATGCCGTGCGCGCCGCCGC
CGACCGCGACCCGGCCCTGCGCAAGCTCTTCGTCCGGGGCCTCGGCTGGGAGACCAACTC
CGACTCGCTCCGCGCCATCTTCTCCGCCTACGGCGACCTCGAGGAGGCCGTGGTCATCAG
CGACAAGACCACCGGCCGCTCCAAGGGCTACGGATTCGTTACCTTCCGCCACGCAGACTC
CGCGCTCCTCGCTCTTAAGGAACCATCCAAGAAGATCGACGCCCGCGTGACCGTCACTCA
ACTCGCGGCCGCTGGCGCTGCCGGTGGACCGTCCGGTGGAACTACTGGCGCAGGTGGCAT
CCCTTCAGCAGACGTCTCACTCCGCAAGATCTTTGTTGGGAACGTTCCCGCTGACATGCC
ATCAGAGCGCCTCCTCGCGCACTTTGCTTCCTATGGAGAGATTGAAGAGGGGCCGCTTGG
ATTCGACAAGCTGACGGGCAAGTTTAGGGGCTTTGCGCTCTTTGTGTACAAGACACCTGA
GGGGGCGCAGGCCTCACTAGTGGACTCAACTAAGGTAATCGATGGGCAACAGCTCTTGTG
CAAGCTAGCCATCGAGGGGAAGAAGGGGAAGCAGCAACCGCAGCAATCTGGGCCTGCCGG
GCAACAGCAACCACAGATGCTCCAGGGTGGCCCGCCGGACATGCCTGGTTCTGGGCTTGG
GCTAGGAGGACCTCAGATGGGTGGGCAGTATGGTGGCCCTGGGAATGGTATGCCATCGTT
TGGTGCATTTGGGGGTCCCAACCCATATGGTAACATGCCATCGTCCATGGGTGGCAGTGG
TGGAGCTGGTTTGGGCCCAATGGGAAATCAGATGCCTTCCGGGATGGGTTCTGCTGGGGC
TGGTGCATTTGGCGGCGGTGGCGGACTGGGTGGTGGTTCATTCGGGGGCTCATCTCAATT
TGGTGCTGCTGGTATGGGGCCTTATGGTGGTCTAGGCATGGGCGGACCTTCCTCACTATA
CCGTATGCAACAGGGCTCAGGTGGGCTGCCCTCAGGCTATGGCGAGGGTGGAAACTATCC
TCTTCCAGGGTCTGGTTTCCGGGGTCAGGATCCTCAAGGGATGTCACCAGGACCAGGTGG
CAGGGCTCCTCCAATGTACCCCAATGTGCCACCTTATTTCTAAGGTTGTTGACAACTCTT
GGGAGCATATGCTTTGAATGGTTGTGCTGAATTCAGAAGTGTTGTCTGCATGCATGGATG
TCTTGCATATTCTGGCTACCTCTGATCTGGAAATCAGTTTTGCTCTGAGTTTTCGCTGTT
AAGAGATAAATGAAGCTAGATTAGTCTTTTATGGGAACTCTTCACTAGACATGTACTTCT
TATGACTGCTTCGCAGTCTGTCTATTTAAATACCCGAATCATCATTTTTATATTCTTGTG
TATTGTCTTGTGATACCAAGTTACTTATGGTCGTGTATGGTGAAAGTTTGCTTGGTAATT
TGTGGACTGTTTATATGTATGAGTGATATCGACATGTCTGCTTGGTAGGAAAAAAAAAAA
AAGTCGAATATTTTTGCAGGTTCTAAAGAATGCTTTTACTTTCGATGATGTTTTCGGTAA
GTTTGGAGTGTTGATTTCCTTTCATGGGTATCATCTCTTTATGTAGTTTCCATGCATTCT
GTCTGTTGAATGTAAAATCCTGTTTGTCGCATCTCTGTTAGTGTGGTGTACACTGAAGGG
TGTGCATCTAGTCTGAGCTCGTGTTGACTGCACAAGTTTTTGTTACTTGTAGAACTGTAC
ATTTTGTGTACAGGTCAGATTTTTCTGAAGAAGAGCTGGTTCTGGTTTGGTCTCTCCGTT
GAATGCTTCCTCTCCTTCCATCTCACAAGCATTTTTAGGTTGTCCCAACTAAGCTACTCT
CCTATCTTGACAAGCATTCTTAGTTGTCCCTAGCTAAAATAATTAGCTTGAGACCCGAGC
TTGCCGGGTGCTGTTAGTATGAGCGCGTTGATCGACTTCAAAAAGAGTCATTCAAGCAAT
TGTAACTGTGATTTTTTTCCCATTATATTGTAAAGAATAATTTGGTTTAAGTT

Homology of Contig U35_16629 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g42820.1	448	1e-95	protein\|RNA recognition motif containing protein, putative, expressed
Brachypodium v1_2	Bradi2g43460.2	449	1e-97
Arabidopsis v10	AT3G15010.1	404	3e-64	RNA-binding (RRM/RBD/RNP motifs) family protein \| chr3:5052844-5054058 FORWARD LENGTH=404