barSeed - Barley Seed Development Database

Probe CUST_38185_PI390587928

Source Contig U35_783

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38185_PI390587928	Hv_44K_v2	CAGTTCACCTGTACTTGTATATTACTTCAATAAATCTGAAATCGATGTCTTAGCCAGCTA	1382	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371600	2185	7e-23	2063 - 2122	98	59 / 60	plus	ABC02867 ABC05532 ABC05533
MLOC	MLOC_15108.1	1608	9e-22	1540 - 1597	98	57 / 58	plus	ABC05532 ABC05533
JLOC1	JLOC1_10340.1	1710	5e-22	1555 - 1612	98	57 / 58	plus
Harvest21	ABC05532	1473	1e-24	1397 - 1455	100	59 / 59	plus	ABC05532
Harvest35	U35_783	1458	3e-25	1383 - 1442	100	60 / 60	plus

Contig Sequence (1458 bp)

>U35_783 1458 Hv_44K_v2
AACAGATTGACACTGCCATTTCCACTGCACTGAAGGAGAGCAAGCCAGTTTACATCAGCA
TCAGCTGCAACCTCCCCTCGATCCCGCATCCTACCTTTAGCCGCCATCCTGTCCCTTTCT
TTCTCTCCCCAAAACTGTCAAACCAGATGAACCTGGAAGCAGCAGTGGAGACTGCTGCGG
CTTTTTTGAACAAATCAGTCAAGCCTGTCCTTGTTGGCGGACCGAAGATGAGGGTGGCCA
AAGCATGTGAAGCTTTCGTAGAGCTGGCTGATGCATGCGGTTATCCGGTTGCAGTGATGC
CTTCTGCAAAGGGGCTTGTGCCAGAGCACCATTCTAGATTTATTGGCACATATTGGGGTG
CTGTGAGCACTCCATTCTGTGCTGAGATTGTGGAGTCAGCTGATGCCTATTTGTTTGCTG
GCCCGATATTTAATGACTACAGCTCGGTTGGGTACTCACTTCTTCTCAAGAAGGAGAAGG
CCATCATCGTCCAGCCGGACCGAGTAGTGATTGGGAATGGGCCTGCATTTGGGTGTGTTC
TGATGAAGGACTTCCTGCATGCACTTGCAACCCGGCTGAAGAAGAACACAGCTGCCTACG
ACAACTATAGTCGGATTTTTGTGCCTCAGGGCGAACCCCTTTCCTCTGAGCATGGAGAGC
CTTTGAGAGTGAATGTACTTTTCAAGCATATTCAGAAAATGTTGTCTGGCAGCTCAGCTG
TTATAGCAGAGACTGGGGACTCATGGTTTAACTGCCAGAAGCTGAAACTGCCGGAAGGCT
GTGGGTATGAATTTCAGATGCAATATGGATCAATTGGTTGGTCAGTGGGTGCAACTCTGG
GATATGCGCAGGCTGCCAAGGATAAGCGAGTCATTTCCTTCATTGGAGATGGCAGCTTTC
AGGTGACGGCGCAAGAAGTGTCGACGATGCTCCGGTGGGGACAGAACAACATAATCTTCC
TGATAAACAACGGTGGGTACACCATCGAGGTGGAGATCCATGACGGCCCTTATAACATCA
TCAAGAATTGGAACTACACTGGCGTGGTGGAGGCATTCCATAATGGCGAGGGCAAGTGCT
ATACAGCCAAGGTCCGAACAGAGGAGGAACTGAAGAAGGCAATTGAGGCATCCCTAGGAC
CTAACAAGGACAGCCTGTGCTTTATAGAGGTAATTGTGCACAAGGATGATACTAGTAAGG
AGCTTCTTGAGTGGGGTTCTAGGGTTTCCGCTGCGAATAGCCGCCCACCAAATCCCCAGT
GAACACATCAGGTCTCGACAAGATCCTCAAGTTCTGAATAGATGTTACTGATCTCTGAAT
AAATCATCCATTTGAGTCCACTGTTGTTGCACGTGCTCATGGTTACTGTACATAGATGGT
CTCAGTTCACCTGTACTTGTATATTACTTCAATAAATCTGAAATCGATGTCTTAGCCAGC
TAAAAAAAAAAAAAAAAA

Homology of Contig U35_783 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g06660.1	598	protein\|thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed
Brachypodium v1_2	Bradi2g03840.1	598
Arabidopsis v10	AT5G54960.1	607	\| Symbols: PDC2 \| pyruvate decarboxylase-2 \| chr5:22310858-22312681 REVERSE LENGTH=607