barSeed - Barley Seed Development Database

Probe CUST_38184_PI390587928

Source Contig U35_784

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38184_PI390587928	Hv_44K_v2	CTAAATAAATCTGAAAAAGACGATGATGTGGCCAGCTAAAGAAGCTCTTGGTCTGGGAAA	1556	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.022	0.073	0.484	1.800	2.278	4.054
Raw	6.466	37.606	229.039	1338.359	566.387	1095.592

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_4748.1	2049	3e-24	1753 - 1811	100	59 / 59	plus
Harvest21	ABC05533	1626	3e-25	1557 - 1616	100	60 / 60	plus	ABC05533
Harvest35	U35_784	1626	3e-25	1557 - 1616	100	60 / 60	plus

Contig Sequence (1626 bp)

>U35_784 1626 Hv_44K_v2
GCAACGACTACGGCAGCAACAGGATCCTGCACCACACCATCGGCCTCCCCGATTTCTCGC
AGGAGCTCCGATGCTTCCAGAACGTCACCTGCTACCAGGCAGTGGTGAACAACTTGGATG
ATGCACATGAACAGATTGACACTGCAATCTCCACTGCACTCAAGGAGAGCAAACCTGTTT
ACATCAGCATCAGCTGCGACCTCCCGTCGATCCCTCATCCCACCTTTAGCCGCCATCCTG
TCCCTTTCTTTCTCTCCCCAAGACTGTCAAACCAGATGAGCCTGGAAGCAGCGGTGGAAG
CCGCTGCGGCATTCTTGAACAAATCGGCCAAGCCGGTCCTCGTTGCGGGAGCGAAGATGA
GGGTGGCCAAAGCACGCAAAGCCTTCCTAGAGCTTGCCGATGCATGCGGTTATCCGTTCG
CGGCGATGCCTTCTGCCAAGGGGCTTGTGCCAGAGCACCACCCCAGGTTCATCGGCACGT
ACTGGGGTGCTGTGAGCACTCCATTCTGTGCTGAGATTGTGGAGTCGGCTGATGCATACT
TGTTTGCCGGCCCGTTATTCAACGACCACAGCTCGGTTGGGTACTCGCTGCTACTCAACA
AGGAGAAGGCCATCTTTGTCCAGCCGGACCGAGTGGTGATCGGGAATGGGCCTGCATTTG
GGTGTGTTCTGATGAAGGACTTCCTGCGTGCACTTGCTACCCGGCTCAAGAAGAACACGG
CCGCGTGCGAGATACATAGTCGGATTTTTGTGCCTCAGGGCGAACCCCGTCCCTCTCAGC
CTGAAGAGCCTTTGAGAGTGAATGTGTTCTTCAACCATATTCAGAAAATGTTGTCTGGCA
ACACAGCTGTTATAGCAGAGACCGGGGACTCATGGTTTAACTGCCAGAAGCTAAAACTAC
CACAAGGCTGTGGGTATGAATGTCAGCTGCAATATGGGTCAATTGGCTGGTCGGTTGGGG
CTACTCTGGGATATGCGCAGGCTGCTAAGGATAAGCGAGTCATTTCCCTCATTGGAGATG
GCAGCTTTCAGGTGACGGCACAAGAAGTGTCGACGATGCTCCGGTGGGGACAGAACAACA
TCATCTTCCTCATAAACAACGGGGGCTACACCATCGAGGTGAAGATCCATGACGGTCCTT
ACAACATCATCAAGAATTGGAACTACACGGGCTTGGTGGAAGCATTCCATAACGGCGAGG
GAAAATGCTATACTGCAAAGGTTCGAACGGAGGAGGAACTGAAGGAGGCAATTGAGGCAT
CCCTGGGACCTAACAAGGACAGCCTGTGCTTTATAGAGGTAATTGTGCACATGGATGACA
CTAGTAAGGAGCTTCTTGTGTGGGGAGCTAGGCTTTTCGCCGCAAATAACCGCCCGCCGA
ATCCTCAGTGAACACACCAGGTCTCTACAAGATGCTCATCCAGCTTAATGAGGTCATGTG
AAAGTTCACATGTACCGAACTCTGAATAAATCCTCCATTTGAGTTTCACTGTTGTCGCAA
GTGCTCATGGTTACTGTACGTAGGTGTTCTCAGTTCAGGAACTGGTACTTGTGTACCTAA
ATAAATCTGAAAAAGACGATGATGTGGCCAGCTAAAGAAGCTCTTGGTCTGGGAAAAAAA
AAAAAA

Homology of Contig U35_784 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g06660.1	598	protein\|thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed
Brachypodium v1_2	Bradi2g03840.1	598
Arabidopsis v10	AT5G01320.1	603	Thiamine pyrophosphate dependent pyruvate decarboxylase family protein \| chr5:129484-131625 REVERSE LENGTH=603