barSeed - Barley Seed Development Database

Probe CUST_38182_PI390587928

Source Contig U35_785

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38182_PI390587928	Hv_44K_v2	CCCTGTGTTCTTCCATCCTGCCAATGCTACGAAGATTATGAGATATTTTTAGCTTGCCTC	2136	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.507	1.210	1.353	0.859	0.374	0.302
Raw	7848.813	9880.630	9748.627	9558.813	1466.500	1319.079

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38762.4	2251	2e-23	2131 - 2188	100	58 / 58	plus	ABC02867
MLOC	MLOC_38762.2	2988	2e-23	2814 - 2871	100	58 / 58	plus	ABC02867
JLOC1	JLOC1_25232.1	2553	1e-23	2218 - 2275	100	58 / 58	plus
Harvest21	ABC02867	2264	3e-25	2111 - 2170	100	60 / 60	plus	ABC02867
Harvest35	U35_785	2292	3e-25	2137 - 2196	100	60 / 60	plus

Contig Sequence (2292 bp)

>U35_785 2292 Hv_44K_v2
CTGTTGGCCTTCAACCAAAACCAGCACACGTCAACGGAACAGCTCAACAAAATCCCCACC
AAGACCTCGAATATTCCCCAAAACCCCACCACCGCCCCCTCTGCCGCTCCCGCTCCCGCT
CCAGCCCCACTAGTGTACTACTCGGATCGATCGATCGCGATGGACACCCACATCGGGTCC
GTCGACGGGCCGTCGCCGGCGGCGGTGAACGGCGCGGTGGGATGCCCGGCGTCCGCGCCG
GGGTGCCCGATCATGTCCTCCCACCCGGCGCCGTCAGCAGCCGGGGAGGCCTCGCTGGGG
CGCCATCTGGCGCGCCGGCTCGTGCAGGTCGGCGTCAGCGACGTCTTCGCCGTGCCCGGG
GACTTCAACCTCACGCTGCTCGACCACCTCGTCGCCGAGCCCGGGCTGCGCCTCGTCGGC
TGCTGCAACGAGCTCAACGCCGGCTACGCGGCCGACGGCTACGCGCGGGCCCGCGGCGTT
GGCGCATGCGCGGTCACCTTCACCGTCGGCGGCCTCAGCGTCCTCAACGCCATCGCCGGC
GCCTACAGCGAGAACCTCCCCGTCATCTGCATCGCCGGCGGGCCCAACTCCAACGACTAC
GGCACCAACCGCATCCTCCACCACACCATCGGCGTCCCCGACTTCTCGCAGGAGCTACGC
TGCTTCCAGACCGTCACCTGCCACCAGGCGGTGGTGACCAACCTGGACGACGCGCACGAG
CAGATCGACACGGCCATCGCGACGGCGCTCAGGGAGAGCAAGCCGGTTTACCTCAGCATC
AGCTGCAACCTCCCTGGGCTACCTCACCCCACCTTTACCCGTGACCCGGTCCCCTTCTTC
CTCGCCCCCAGGATGAGCAACAAGATGGGGCTCGAGGCTGCAGTGGAGGCAACCGTCGAG
TTCCTGAACAAGGCGGTGAAGCCAGTGCTTGTGGCCGGCCCCAAATTGCGGGTGGCGAAG
GCGGGGAAGGCCTTCGTCGACCTTGTGGACGCCAGTGGCTATGCCTATGCCACAATGCCA
TCGGCCAAGGGCTTCGTGCCAGAGACGCACCCCCACTACATCGGCACCTACTGGGGCGCC
GTCAGCACGGCCTTCTGCGCCGAGATCGTCGAGTCGGCCGACGCCTACCTCTTCGCTGGT
CCTATCTTCAACGACTACAGCTCTGTTGGCTACTCGTTCCTGCTCAAGAAGGACAAGGCC
ATCATCGTGCAGCCTGAGCGCGTCATCATTGGGAACGGCCCGGCATTCGGCTGCGTCATG
ATGAAGGAGTACTTGTCTGCACTGGCCAAGCGGGTCCAGAAGAACACCACCGCCTACGAG
AACTACAAGAGGATCTTCGTGCCCGAGGGCCATCCGCTCAAGGGCGAGGCGAACGAGCCG
CTGCGTGTCAATGTGCTCTTCAAGCACATCCAGGACATGCTTACGGGTGACAATGCAGTG
CTCGCCGAGACTGGTGACTCCTGGTTCAACTGTCAGAAGCTGAAGCTGCCCGAGGGCTGC
GGGTATGAATTCCAGATGCAGTATGGCTCGATTGGATGGTCGGTGGGTGCATTGCTCGGG
TACGCGCAAGGCGCAAGTGACAAGCGTGTTATAGCCTGCATTGGTGATGGGAGCTTCCAG
GTGACAGCACAGGATGTGTCGACCATGCTGCGGTGCGAGCAGAACAGCATAATCTTCCTG
ATCAACAATGGCGGGTACACCATCGAGGTGGAGATCCACGACGGGCCTTACAATGTCATC
AAGAACTGGAACTACACCGCCCTTGTGGAGGCCATCCACAACGGCGAGGGCAAATGCTGG
ACTGCCAAGGTGAAGTGCGAGGAGGAGCTGACGGCGGCGATAGAGACGGCGCTGGGGGAG
AAGAAGGACTCTCTGTGCTTCATCGAGGTGATCGCGCACAAGGACGACACCAGCAAAGAG
CTTCTGGAATGGGGCTCCAGGGTCTCCGCTGCCAACTCCAGGCCACCCAACCCCCAGTAG
ACGAGTCGACCAAAGCACGCCTGCGCATCAGTAGCACTAGTAGCCGGAGCAGCAGCCACG
TCGCCCATCAAATAATGTGAACAGTCTACCTTTGCTCGTCTGTTATGTTGTTAGTTTTGT
GCCTATTACAGTAGTGACTTGTGAGCTGCGGCCATCCCCTGTGTTCTTCCATCCTGCCAA
TGCTACGAAGATTATGAGATATTTTTAGCTTGCCTCAAAAAAAAAAAAAAAAATATTTGT
GTACTAGTATCTTCTTTTAAGATGGTCGGCAAATATAATTGAAAATCACGAGCTAAAAAA
AAAAAAAAAAAA

Homology of Contig U35_785 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g18220.1	606	protein\|pyruvate decarboxylase isozyme 2, putative, expressed
Brachypodium v1_2	Bradi1g65440.1	609
Arabidopsis v10	AT4G33070.1	607	Thiamine pyrophosphate dependent pyruvate decarboxylase family protein \| chr4:15952519-15954676 REVERSE LENGTH=607