barSeed - Barley Seed Development Database

Probe CUST_38172_PI390587928

Source Contig U35_28607

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38172_PI390587928	Hv_44K_v2	TGGAGGCCACAATGTAGCATCTGTTACTGAGTCATTTGGCGAAGAATTCAGCAATGTCTG	534	GeneList: skyblue3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.227	1.017	1.179	0.843	0.665	0.527
Raw	315.413	377.559	414.835	432.949	126.927	110.911

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC27583	597	3e-25	535 - 594	100	60 / 60	plus
Harvest35	U35_28607	597	3e-25	535 - 594	100	60 / 60	plus

Contig Sequence (597 bp)

>U35_28607 597 Hv_44K_v2
GGGCTGCAGGAATTCGNACGAGGTGATATCTACAATGTGTTGTTTTGGAAGAACAATATG
CAGGGATGAAATCTCAGCAGTTTCAGGGAATTTTGAATGCTTGGTAGAAGCTGGTCATGC
TGGAAATGATAGAGGTCTTACTGGTACGTCAAAAGATGAGTTTGAATCATCAGGGCATGT
TTCTCCTGACAATTCTTCAGCTCTTTTATTTGATAAAAATGGTCCAAATGTTTCCTCAGT
AAATCATGAGGGGCCAGTCAAGGAAGATGATACACCTGTTTTAGAAGACAAGCCTGGAAC
TAATTCTGGGTCTCAAGAAAAAGAGATAGCACCTCTAATAAACAATTTAAGCAGCGATAT
AGTTTGTACCACAGTTGCTGATACATCCAATAAATCAATGGATAAACCTGACTGTTCAGG
AGGTGTTCCATCCGATGGTTCTCTTGCTGGTGTACTTGAAGGAAATGATTCGACGATTTC
CTCAATAAATCATGCTGATTCAGTTGAGAAAGGTGCTAATTCTACTTCAGAAGTTGGAGG
CCACAATGTAGCATCTGTTACTGAGTCATTTGGCGAAGAATTCAGCAATGTCTGTGA

Homology of Contig U35_28607 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None