- Probe CUST_38170_PI390587928
- Source Contig U35_28609
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_38170_PI390587928 | Hv_44K_v2 | TACTTTGCTCATACTGCTGGAGGCCGAATGATTGGCAAAAAGGTTGCTGAGAAGATTCTG | 616 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.523 | 1.561 | 1.056 | 0.677 | 0.202 | 0.156 |
| Raw | 463.565 | 714.432 | 435.333 | 454.863 | 45.340 | 39.572 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK361508 | 1270 | 2e-24 | 906 - 965 | 100 | 60 / 60 | plus | ABC05534 |
| MLOC | AK367840 | 996 | 2e-24 | 615 - 674 | 100 | 60 / 60 | plus | ABC05534 |
| MLOC | MLOC_21909.1 | 1105 | 2e-24 | 611 - 670 | 100 | 60 / 60 | plus | ABC05534 |
| JLOC1 | JLOC1_15192.1 | 1140 | 8e-25 | 610 - 669 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC27585 | 676 | 3e-25 | 617 - 676 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC26850 | 593 | 3e-25 | 436 - 495 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC05534 | 1291 | 3e-25 | 855 - 914 | 100 | 60 / 60 | plus | ABC05534 |
| Harvest35 | U35_28609 | 676 | 3e-25 | 617 - 676 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_28153 | 593 | 3e-25 | 436 - 495 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_16466 | 1301 | 3e-25 | 855 - 914 | 100 | 60 / 60 | plus |
Contig Sequence (676 bp)
>U35_28609 676 Hv_44K_v2 GCACCTCCTTCCTCTTCTCGCGAAAAAAGAAAGAGGAGAACGGAACCCCATCGTCTTCCC CAAGCCGGAGCGAGAGAGCGAGCGAGAGAGAGAGAGAGCCTCACCCGCACGCCATTCCCC GCCGTTCCAATCCCCCGCGCGATTAAAAATCCAACAAGCCGCAGTATTCTATCCCCATCC CGCCCCCCACCCCCTCTCCCTCCTCCGCGCGCCCTCGCCCCCGCACCAAGGCCGCACTCC AAAGCAACCGCCCGTCGCTATCGCCATGCGCCTGCACACCAAGGACCAGGCCAGGGAGGG GGAGAAGGAGCCCCAGGCGCCCCCCGTCGCCAGGTGGGAGCCCACCGTCGAGGGCTACCT GCGCTTCCTCGTCGACAGCAAGCTCGTCTTCCAGACCCTCGAGGACATCGTCGACCGCGC CGCCGTCCCCTGGTATGCGGATTTTAGGAATACTGGGTTAGAGAGATCAGAGCCACTGAA GAAAGATCTGGAATGGTTCACGGAACAGGGTCACACCATTCCAGAACCAACTGCTGCTGG TACTGCATATGCTTCCTATCTGGAAGAGTTGTCTGAGAAGGACCCCCAAGCATTTATCTG CCACTTCTATAATGTGTACTTTGCTCATACTGCTGGAGGCCGAATGATTGGCAAAAAGGT TGCTGAGAAGATTCTG
Homology of Contig U35_28609 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g40080.1 | 290 | 9e-87 | protein|heme oxygenase 1, putative, expressed |
| Brachypodium v1_2 | Bradi1g36640.1 | 280 | 4e-92 | |
| Arabidopsis v10 | AT2G26670.1 | 282 | 1e-68 | | Symbols: HY1, ATHO1, HO1, TED4, GUN2, HY6 | Plant haem oxygenase (decyclizing) family protein | chr2:11341816-11343394 FORWARD LENGTH=282 |