barSeed - Barley Seed Development Database

Probe CUST_38163_PI390587928

Source Contig U35_16631

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38163_PI390587928	Hv_44K_v2	CCACTTTCCTTATGTTTTCCCACTGTAATAAGATGAAATAAATGTTCTGGATGTTGGCGT	1209	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353666	1286	2e-24	1222 - 1281	100	60 / 60	plus	ABC06491 ABC29974
Harvest21	ABC29974	320	3e-25	242 - 301	100	60 / 60	plus	ABC29974
Harvest35	U35_16631	1288	3e-25	1210 - 1269	100	60 / 60	plus

Contig Sequence (1288 bp)

>U35_16631 1288 Hv_44K_v2
CTTCTTTCACCTTCCTCCTCCGTCCCTTCCCACTCCCACGCCGACGCCGACGCCGCCGAC
GCGCCCGTCCTCCGGTCTACATTATATACCCGCGCCCTCACAATCCACCATTTTTCTTCC
TCCCCAACCCGCCATTATCCATCCTCAACCAGACGGTTCCCATCCCCGGGCGTCCTGCGT
CTGCCATCTCCTTCGCTCCATCCGCGCAGATCGGCCGGCCGGTCGAAATGGGCCACGAGG
GCGCCAAGTACGGCGACGACGGCCGCCCCACCTGCGACTGCCTCCTCTTCGACCTCGATG
ACACGCTCTACCCGGTGGGATCAGGCATCGGCCTCGACGTCATGAACAACATCCAAGAAT
ACATGATCGACAAGCTCGGCATCAACAAGGGCGTCAGCCTCGAGCTCTGCATCCTCCTCT
ACAAGCAGTATGGAACCACCATGGCCGGTCTCAGGGCCATTGGGTACCAATTCGACTACG
ATGATTTCCACGGCTTTGTTCACGGAAGGTTGGCCTACGAAAAGCTCAAGCCCGACCCGG
TGCTCAGGAACATCCTCCTCAGCCTACCCATCCGCAAACTCGTGTTCACGAACGGTGACA
GGCTCCATGCTTCGAGGGCCATGAAGAGGCTCGGAATCGATGACTGCTTCGAGGGGGTTC
TGTGCTTTGAGACATTGAACCCGGCATCGCCCACTCCTGTGCCATCTGACAAAGTTGAGA
TCTTCGATATAATGAAGCACCTGGCTCATCCTGAGCCTGGGGTTGAGCTGCCAAGATCAC
CAATCCTGTGCAAACCGAACATAGATGCAATGCTGCATGCCCTCAAGCTTGCCGACATCA
ATCCTCAGACTACTATATTTTTCGATGACAGCGTCAGGAACATACAGGCCGGGAAGCAGA
TTGGAATGCACACTGTCCTGGTTGGAACCTCTGAAAGGATTAAAGGCGCTGACCATGCCT
TGGAGAGCCTTCACAACATGAAGGAGGCGTTTCCTGAACTATGGGTGGAGGCTGTGAAGG
ACGAGGACGTCAGGAACTCGAGCAAAGTCGGAATCGAGACATCGGTGATCGCGTGAAATC
CTCATGAAGTGCACATGGGACAGGCGTATCATTATCAGAAGCAGTCTATGCACGCACTAT
CTGTTTGTCTGACAGTAGATGTACTGATTAGAACAAGGGAAATGTTGTAACCGTGAAGGG
AAACTGATACCACTTTCCTTATGTTTTCCCACTGTAATAAGATGAAATAAATGTTCTGGA
TGTTGGCGTCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_16631 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g74152.1	282	1e-149	protein\|haloacid dehalogenase-like hydrolase family protein, putative, expressed
Brachypodium v1_2	Bradi2g62150.2	284	6e-163
Arabidopsis v10	AT5G02230.1	280	3e-105	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein \| chr5:449132-450507 FORWARD LENGTH=280