barSeed - Barley Seed Development Database

Probe CUST_3815_PI390587928

Source Contig U35_26327

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3815_PI390587928	Hv_44K_v2	TGAATGGGCCGCTGCCGGCATTCAGGCCGGACGTCAATGTCATTCTCACCGGCAATCCCA	870	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61453.1	3875	2e-24	2696 - 2755	100	60 / 60	minus	ABC50730
MLOC	MLOC_61453.2	3051	2e-24	1872 - 1931	100	60 / 60	minus	ABC50730
JLOC1	JLOC1_40158.1	3051	8e-25	1121 - 1180	100	60 / 60	plus
Harvest21	ABC24440	950	3e-25	871 - 930	100	60 / 60	plus
Harvest35	U35_26327	950	3e-25	871 - 930	100	60 / 60	plus

Contig Sequence (950 bp)

>U35_26327 950 Hv_44K_v2
AGATCTGCCTCGACAACAACCCGCTCAACAGGACGTCCGGCGGCTGGGAGGTGCCGCCGA
CGCTCGCGTCCTCCTCGCCGCAGCTCATGAGCCTGCGCCTCGTCAACTGCAGCCTTGTCG
GCGGGATCCCGGGCTTCCTCGGCGGCATGAGCGGGCTGCAGATGCTCTCCCTCTCCTACA
ACTCGCTCTCCGGCCCCATCCCCGAAAGCTTCGCGGGGTCCGGCCTCCAGAAGCTCTGGC
TCAACAACCAGCTCGGCGAGACCAAGCTCTCCGGCACGCTCGACGTGCTCGCCGGGATGA
CCCACCTCCAGCAGGCCTGGCTGCACGGCAACCAGTTCACCGGCCCCATCCCCGACGGCA
TCTCCAACTGCAAGCAGCTCGCCTACCTCTATCTCAACAACAACAACCTCGTCGGCCTCG
TGCCGCCCGGCCTCGCCGCCCTGCCGCTGCTCCACGACGTCAAGCTCGACAACAACAACC
TCGTCGGCCCCGCCCCGGCGCTCAAGGCCGGCGGCAACATCACCATCTCCCACAATGGCT
TCTGCGCCGACAAGCCCGGGGACAAGTGCGCGCCGGAGGTCATGGCATTGCTCCACTTCA
TCGCCGACGCTGGTTACCCGCACAAGCTCACCGATTCATGGTCCGGGAACGACCCCTGCA
AGGGCTGGCTCGGCGTCACCTGCACTCAGGGCAAGGTGTCGGTGCTCAACCTGCCTTCCT
CTGGCCTCAATGGCACCATCAGCAAGAGCCTCGGAGACCTGTCTGCGCTCTCGGACATCA
GGCTCGACAGCAATCACCTCACTGGCCATGTCCCGGACAGCCTCACCGGCCTCAGGCTGC
TAAAGAAGCTCGATCTGGGCATGAACGACCTGAATGGGCCGCTGCCGGCATTCAGGCCGG
ACGTCAATGTCATTCTCACCGGCAATCCCAACTTCAACACGCAGTCGTCG

Homology of Contig U35_26327 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g58910.1	939	5e-102	protein\|receptor protein kinase TMK1 precursor, putative, expressed
Brachypodium v1_2	Bradi5g26550.1	950	1e-121
Arabidopsis v10	AT2G01820.1	943	3e-52	Leucine-rich repeat protein kinase family protein \| chr2:357664-360681 REVERSE LENGTH=943