barSeed - Barley Seed Development Database

Probe CUST_38158_PI390587928

Source Contig U35_30927

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38158_PI390587928	Hv_44K_v2	AAGACCCTCCTCAAGAGCGACCAGCTCTACCAGTACGTGCTGGAGTCCACCGTGTTCCCC	118	GeneList: floralwhite MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.397	0.613	1.852	1.712	0.856	1.105
Raw	13.039	30.863	82.666	114.008	21.318	29.462

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73147.1	1007	2e-24	160 - 219	100	60 / 60	plus	None
MLOC	MLOC_73147.2	1051	2e-24	164 - 223	100	60 / 60	plus	None
JLOC1	JLOC1_48682.1	1041	8e-25	154 - 213	100	60 / 60	plus
Harvest21	ABC31048	204	3e-25	119 - 178	100	60 / 60	plus
Harvest35	U35_30927	204	3e-25	119 - 178	100	60 / 60	plus

Contig Sequence (204 bp)

>U35_30927 204 Hv_44K_v2
CACACTTCTCTGCACGACAAGCAGCCTATTTTCAGCGACACCGCCGGCCGGCAGAACCAC
CCGCCGGAGAATGGCCGCCCCCGCCCCCGCCCCCGCCGGCGGAAGCAGCCCCCACAGCAA
GACCCTCCTCAAGAGCGACCAGCTCTACCAGTACGTGCTGGAGTCCACCGTGTTCCCCCG
CGAGCCCGACTGCCTCCGGGAGCT

Homology of Contig U35_30927 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None