barSeed - Barley Seed Development Database

Probe CUST_38157_PI390587928

Source Contig U35_16634

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38157_PI390587928	Hv_44K_v2	GTTTTCGTTGCTGCATGCATGATCATTCCGAGAGTTGAAAAGAAAGATATTTTAAAGTTG	497	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365314	1291	2e-24	1148 - 1207	100	60 / 60	plus	ABC00112 ABC09463
MLOC	MLOC_39218.1	1028	2e-24	462 - 521	100	60 / 60	plus	ABC00112
JLOC1	JLOC1_25559.1	844	8e-25	464 - 523	100	60 / 60	plus
Harvest21	ABC00112	1213	3e-25	1134 - 1193	100	60 / 60	plus	ABC00112
Harvest21	ABC40182	459	1e-23	9 - 69	98	60 / 61	minus
Harvest35	U35_16634	589	3e-25	498 - 557	100	60 / 60	plus

Contig Sequence (589 bp)

>U35_16634 589 Hv_44K_v2
GCGTACGCTGCCGCGGCGGCGCCTCCGTCGGGGTACCCGGGTTACGGCTCCACGGCGCCG
CCTCCGCAGGCCGCAGCACCGTACGGATCCGCTCCAGCGCCTTACGGCGCCGCGCCTCCT
CCTCCTCAGGGAGCAGCTGGTGCGTACGGGTCCTCTGCTCCGGCCTACGGCGCGGCGCAG
CCGGCTCAGGGAGCAGGGTACGGGACGACGGGCGTGGCCCTGGACCAGAGCGGCGGGAAG
AAGAAGAAGGGGATGGGGATGGCGGGCGGGCTGGCGGTGGGCGCGGCGGCGGGCGTGCTG
GGCGGGCTGGCGCTGGCGGGCGGGGCGAGCTACGTGGAGAACAAGATCGAGGACCGCGTG
ACGGAGCGCGTGGAGGAGGACATGTACGGCGGTGGGTACGGCGACTACGGCGGCGACGAC
GACTACTAGCCTAGCCTAGCAAGTGATGAATGCATGGATCTGAAGGGAGGCCATGAATGA
ATGAATGAATCTTTTATGTTTTCGTTGCTGCATGCATGATCATTCCGAGAGTTGAAAAGA
AAGATATTTTAAAGTTGAAATTTAAAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_16634 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None