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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_38142_PI390587928Hv_44K_v2ATGCTGCAACACGCACATTCTTATTATACAATTAATCACGGTTAATCTTCTCAAGTCCCA658GeneList: yellow
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.7482.0481.1910.7660.3390.409
Raw 2552.1633065.7951507.8571548.085237.508315.070



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_44517.18151e-23733 - 79010058 / 58plus
Harvest35U35_7957343e-25659 - 71810060 / 60plus



Contig Sequence (734 bp)

>U35_795 734 Hv_44K_v2
GCAGCCACCACCGAAGCAGGACTCCGGAGAGCAGGCGAGGCGGGAGACCGAGATGGCGCG
CGGCGTGACGGCGGCTACCAAGGGCGGCGCGGGCGCCGGGAAGAAGAAGGGGTCGGTCAC
CTTCGTGATCGACTGCACCAAGCCCGTGGACGATAAGATCATGGAGATCGCGTCGCTCGA
GAAGTTCCTGCAGGAGCGCATCAAGGTCGCCGGGGGCAAGGCCGGCAACCTCGGCGATTC
CGTCACCGTCGCCCGCGACAAGAGCAAGGTCACCGTCACTTCCGACGGGGCCTTCTCCAA
GAGGTACTTGAAGTATTTGACAAAGAAGTACCTGAAGAAGCACAATGTGCGTGACTGGCT
TCGGGTGATTTCGTCCAACAAGGATCGCAGCGTCTACGAGCTCCGGTACTTCAACATTGC
TGAGAATGAGGGTGAGGAGGAGGATTAGATATGCACTGTCTTGTTTCTGTGTCGTGTGAA
ACTTTGAACTTGTTGGAGCACTTCTGCGGTAGAGTTTTGATGTTTATTTTTTTCACCCAT
GTTTTGAATTGTGGCGATGACGCCATGTGATGGATGCTTAGATAACCAAGCTGAAGAATT
GTCCGTTCTCGTTCTAAAAAAAAAAAAAAATGTTGCAGAGGATATGCGTGGCCTAGAAAT
GCTGCAACACGCACATTCTTATTATACAATTAATCACGGTTAATCTTCTCAAGTCCCAAA
AAAAAAAAAAAAAA



Homology of Contig U35_795 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os03g22340.11327e-57protein|60S ribosomal protein L22-2, putative, expressed
Brachypodium v1_2Bradi1g62830.11323e-58
Arabidopsis v10None