barSeed - Barley Seed Development Database

Probe CUST_38138_PI390587928

Source Contig U35_797

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38138_PI390587928	Hv_44K_v2	GTTTGGTCGTTACTTGTCCTTTTTATAGCCCGCATATATAAGCTAAATATGATGGTGAAA	2189	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357350	2367	2e-24	2138 - 2197	100	60 / 60	plus	ABC02562 ABC02564
Harvest21	ABC02564	819	3e-25	28 - 87	100	60 / 60	minus	ABC02564
Harvest35	U35_797	2276	3e-25	2190 - 2249	100	60 / 60	plus

Contig Sequence (2276 bp)

>U35_797 2276 Hv_44K_v2
GCACGAGGATCTAAAATACCTACAAGTAGAGCCAAGCCATTGCTGCACAGCTTCATGCAC
AATTCAGATCGACTACGTACCTCGCTGTTGGCTGTAGACAACGATCGACGACGACGATAT
CCAGCGAAGCAGAGGAAAGCATAGCAGTCTGAGCATATCATGTGCGGCATACTGGCGGTG
CTGGGGTGCGGCGACGAGTCGCAGGGGAAGAGGGTGCATGTGCTCGAGCTCTCGCGCAGG
CTCAAGCACCGCGGCCCGGACTGGAGCGGCCTGCACCAGGTCGCCGACAACTACCTCTGC
CACCAGCGCCTCGCCATCATCGACCCGGCCTCCGGCGACCAGCCGCTCTACAACGAGGAC
AAGTCCGTTGCTGTTGCCGTCAACGGGGAGATCTACAACCATGAGGAGCTCCGGGAACGG
CTCTCCGGCCACAGGTTCCGGACCGGCAGTGACTGCGAGGTCATCGCCCATCTGTATGAG
GAACATGGAGAAAGCTTCATTGACATGTTGGATGGTGTTTTCTCGTTCGTGTTGCTTGAC
GCACGAGATCACAGCTTCATTGCTGCTCGTGATGCCATTGGTGTCACGTCTCTCTACATT
GGCTGGGGAATCGATGGTTCAGTGTGGATATCTTCGGAGATGAAAGGACTAAACGATGAT
TGTGAGCACTTCGAGATCTTCCCACCTGGTAATCTTTACTCCAGCAAAGAAAAATGCTTC
AAGAGATGGTATAACCCTCCTTGGTTCTCTGAGGTCATCCCCTCGGTTCCCTATGACCCA
CTACGTCTCAGATCGGCATTTGAAAAGGCTGTCATCAAGAGGCTCATGACAGATGTTCCA
TTCGGTGTCCTCCTCTCTGGTGGCCTCGACTCATCACTGGTGGCAGCCGTCGCAGCCCGT
CATTTCGCAGGGACGAAGGCTGCAAAGCGCTGGGGAACTAGGCTCCACTCCTTCTGTGTT
GGGCTTGAGGGATCACCGGATCTCAAGGCTGCAAAGGAGGTCGCGGATCACCTGGGTACG
GTGCACCATGAGTTCAACTTCACAGTTCAGGACGGCATCGATGCAATTGAAGACGTGATA
TATCACATTGAAACATATGATGTGACGACGATCAGGGCAAGCACACTAATGTTCCAGATG
TCACGCAAGATCAAGGCGCTTGGTGTCAAGATGGTCATCTCTGGTGAGGGTGCTGATGAA
ATCTTCGGGGGGTACTTGTATTTCCACAAGGCCCCCAACAAGGAGGAGTTCCACCAAGAA
ACATGTCGGAAGATCAAAGCTCTCCATCAGTACGATTGCTTGAGGGCCAATAAAGCAACA
TCTGCATGGGGCCTTGAGGTTCGTGTGCCATTCTTGGACAAGGAGTTCATCGATGAGGCT
ATGAGCATAGATCCTGAATGGAAGATGATCCGGCCTGATCTTGGAAGAATTGAAAAATGG
ATACTGAGGAAAGCGTTCGACGATGAGGAGAAACCGTTCTTGCCGAAGCACATTCTGTAC
AGGCAGAAGGAGCAGTTTAGTGATGGTGTTGGGTATAGCTGGATTGATGGCCTTAAGGAT
CATGCAGCATCAAATGTGAGTGATAAGATGATGTCCAATGCAAAGTTCATCTACCCACAC
AACACCCCAACAACTAAAGAGGCCTACTATTACAGGATGATCTTCGAGAGGTACTTCCCT
CAGAGCTCGGCGATCCTCACGGTGCCAGGCGGGCCAAGCGTGGCGTGCAGCACAGCCAAG
GCAATAGAGTGGGACGCGCAGTGGTCTGGGAACCTGGACCCCTCTGGGAGAGCAGCGCTT
GGAGTCCATCTCTCAGCCTACGAGCAGGACACGATCGCTGTGGGTGGTAGCAATAAGCCT
GGGCCGATGGAGACCGTGGTGAATGGTGTTGCCATAGAGAGCTGATGAATGACACGTATA
TCGTGTCCTACTAAAGACATATATGATGCATAAGTTCTTGTCGGTGTTGTAATAAGACAG
GCCTATGTTTCTCCTGTTTAATTTAAAAGATTCTCTTGGCCTGGCCAAAAAAAAAAAAAA
AAAAATTGGAGGGGTCGGTGAGCTAGGATGGCAAGCAAAGCTAGGTGAGAGCCGGCGTGG
ACGAGGGAGGTGAGTGGAGAAGAAAAGTGGGGCTTGTCCGGCAAGCTTAGGGGAGCGGGA
TTTGCTGAAATTTATGGTGGGTCCGGTCTGTTTGGTCGTTACTTGTCCTTTTTATAGCCC
GCATATATAAGCTAAATATGATGGTGAAATTTATGGTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_797 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g15420.1	592	protein\|asparagine synthetase, putative, expressed
Brachypodium v1_2	Bradi4g45010.1	586
Arabidopsis v10	AT3G47340.1	584	\| Symbols: ASN1, DIN6, AT-ASN1 \| glutamine-dependent asparagine synthase 1 \| chr3:17438136-17441043 REVERSE LENGTH=584