barSeed - Barley Seed Development Database

Probe CUST_38135_PI390587928

Source Contig U35_798

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38135_PI390587928	Hv_44K_v2	TGGAAGAATTGAGAAGTGGGTTCTGAGGAAAGCATTTGATGACGAGGAGCAACCATTCCT	1335	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63089.12	2054	2e-24	233 - 292	100	60 / 60	minus	ABC02562 ABC02564 ABC39248
MLOC	MLOC_63089.11	1701	2e-24	319 - 378	100	60 / 60	minus	ABC02562 ABC39248
MLOC	MLOC_63089.13	2419	2e-24	307 - 366	100	60 / 60	minus	ABC02562
MLOC	MLOC_63089.9	2291	2e-24	614 - 673	100	60 / 60	minus	ABC02562 ABC39248
MLOC	MLOC_63089.10	2313	2e-24	402 - 461	100	60 / 60	minus	ABC02562 ABC02564 ABC39248
MLOC	MLOC_63089.5	5343	2e-24	2464 - 2523	100	60 / 60	minus	ABC02562 ABC39248
MLOC	MLOC_63089.8	4446	2e-24	2457 - 2516	100	60 / 60	minus	ABC39248
MLOC	MLOC_63089.1	3315	2e-24	2010 - 2069	100	60 / 60	minus	ABC39248
MLOC	MLOC_63089.7	4173	2e-23	2011 - 2068	100	58 / 58	minus	ABC39248
MLOC	MLOC_63089.6	3988	2e-23	2011 - 2068	100	58 / 58	minus	ABC02562 ABC39248
MLOC	MLOC_63089.2	3598	2e-23	2018 - 2075	100	58 / 58	minus	ABC39248
MLOC	MLOC_63089.3	3736	2e-23	2018 - 2075	100	58 / 58	minus	ABC39248
JLOC1	JLOC1_41313.1	3762	8e-25	1652 - 1711	100	60 / 60	plus
JLOC1	JLOC1_41312.4	4407	8e-25	2467 - 2526	100	60 / 60	minus
JLOC1	JLOC1_41312.3	4622	8e-25	2467 - 2526	100	60 / 60	minus
JLOC1	JLOC1_41312.5	4151	1e-23	2021 - 2078	100	58 / 58	minus
JLOC1	JLOC1_41312.2	4113	1e-23	2021 - 2078	100	58 / 58	minus
JLOC1	JLOC1_41312.1	3860	1e-23	2021 - 2078	100	58 / 58	minus
Harvest21	ABC02567	1008	3e-25	350 - 409	100	60 / 60	plus
Harvest21	ABC02563	1991	3e-25	1318 - 1377	100	60 / 60	plus
Harvest35	U35_798	2037	3e-25	1336 - 1395	100	60 / 60	plus

Contig Sequence (2037 bp)

>U35_798 2037 Hv_44K_v2
GCACAACCATCCTCATTCGGAAGAACGGAGAGAGATCTTCTAGCTACATACTGTAGCCGT
CGATCCAGCGAAAATGTGTGGCATACTGGCAGTGCTGGGCTGCGCCGATGACACCCAGGG
GAAGAGAGTGCGCGTGCTCGAGCTCTCGCGCAGGCTCAAGCACCGCGGCCCCGACTGGAG
TGGCATGCACCAGGTCGGTGACTGCTACCTCTCCCACCAGCGCCTCGCCATCATCGACCC
TGCCTCAGGCGACCAGCCACTTTACAACGAGGACAAGTCCATCGTCGTCACTGTGAATGG
AGAGATCTACAACCATGAACAGCTCCGGGCGCAGCTCTCCTCCCACACATTCAGGACAGG
CAGCGACTGCGAGGTCATCGCACACCTGTACGAGGAGCATGGGGAGAATTTCATCGACAT
GCTGGATGGTGTCTTCTCCTTCGTCTTGCTCGACACACGCGACAACAGCTTCATTGCTGC
CCGTGATGCCATTGGTGTCACACCCCTGTATGTTGGCTGGGGAATTGATGGGTCGGTGTG
GATATCATCAGAGATGAAGGGCCTGAATGATGATTGTGAGCACTTTGAGATCTTTCCACC
TGGTCATCTCTACTCCAGCAAGGAGGGAGGCTTCAAGAGATGGTACAACCCACCTTGGTT
CTCGGAGGTCATTCCTTCAGTGCCATATGATCCACTTGCTCTCAGGAAAGCTTTCGAAAA
GGCTGTCACCAAGAGGCTTATGACAGACGTTCCATTCGGTGTTCTACTCTCTGGTGGCCT
TGACTCATCATTGGTTGCAGCGGTTACAGTTCGTCACCTGGCAGGGACAAAGGCTGCAAA
GCGCTGGGGGACTAAGCTTCACTCTTTTTGTGTCGGACTTGAGGGGTCACCTGATCTGAA
GGCTGCAAAGGAGGTAGCCAATTACCTGGGCACCATGCACCATGAGTTCACCTTCACTGT
TCAGGATGGCATTGATGCAATTGAGGATGTGATTTATCACACCGAAACATATGATGTGAC
AACAATCAGGGCAAGCACACCAATGTTCCTGATGTCACGAAAGATCAAGTCACTTGGGGT
CAAGATGGTCATCTCTGGTGAGGGTTCCGATGAGATTTTTGGAGGGTACCTCTACTTCCA
CAAGGCACCCAACAAAGAGGAGCTCCACCGTGAGACATGTCAAAAGATCAAAGCTCTGCA
TCAGTACGATTGCTTGAGGGCCAACAAGGCAACATCTGCATGGGGCCTCGAAGCACGTGT
GCCATTCTTGGACAAGGAGTTTATCAATGAGGCAATGAGCATTGATCCTGAGTGGAAGAT
GATCCGGCCTGATCTTGGAAGAATTGAGAAGTGGGTTCTGAGGAAAGCATTTGATGACGA
GGAGCAACCATTCCTGCCGAAGCACATTCTGTACAGGCAGAAAGAGCAGTTCAGTGATGG
TGTTGGCTACAGCTGGATTGATGGCCTAAAGGCCCACACAGAATCAAATGTGACCGATAA
GATGATGTCAAATGCGAAGTTCATTTACCCACACAACACCCCGACTACAAAAGAGGCCTA
CTGTTACAGGATGATATTTGAGAGGTTCTTCCCCCAGAACTCGGCAATCCTGACAGTGCC
AGGCGGGCCAAGCGTCGCATGCAGCACGGCGAAGGCAGTAGAGTGGGATGCTCGGTGGTC
GGGGAACCTGGATCCCTCAGGGAGAGCAGCACTTGGAGTCCATCTCTCGGCCTATGAGCA
GGAGCATCTCCCAGCAACCATCATGGCAGGAACCAGCAAGAAGCCGAGGATGATCAAGGT
TGCGGCACCTGGTGTCGCAATTGAGAGTTGATGGTGTCCTGTCCTGCTTGCCGTTTCTGA
TAAGAAATAAGATGTACCTAGTCTTGCCATTAGAGTGATGCAGACCTAAGGTTGAGTGAA
GATTGTGCATTAATGTTTCTATAGTTCTTATGAAATCAGAGACCGGATGATTTCTAAAAA
AAAAAAAAAAAAAACATTACTGCATGATGGTTATTATTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_798 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g15420.1	592	protein\|asparagine synthetase, putative, expressed
Brachypodium v1_2	Bradi4g45010.1	586
Arabidopsis v10	AT3G47340.1	584	\| Symbols: ASN1, DIN6, AT-ASN1 \| glutamine-dependent asparagine synthase 1 \| chr3:17438136-17441043 REVERSE LENGTH=584