barSeed - Barley Seed Development Database

Probe CUST_38133_PI390587928

Source Contig U35_799

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38133_PI390587928	Hv_44K_v2	TATTAAAGAAGGAACTCTATCGAGTGAGACATTCACCTAAGCCGGAGTCAAGTGCAGTGA	654	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.484	0.605	0.661	1.773	2.139	3.377
Raw	2573.010	5203.247	4881.717	20518.940	8660.903	15031.810

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249662.1	2051	2e-24	1872 - 1931	100	60 / 60	plus	ABC02580 ABC02581 ABC29337 ABC39068
MLOC	MLOC_7292.1	1074	2e-24	69 - 128	100	60 / 60	minus	ABC02580 ABC02581 ABC39068
JLOC1	JLOC1_4806.3	1127	8e-25	787 - 846	100	60 / 60	plus
Harvest21	ABC02582	830	3e-25	652 - 711	100	60 / 60	plus
Harvest21	ABC02580	958	3e-25	683 - 742	100	60 / 60	plus	ABC02580
Harvest35	U35_799	1004	3e-25	655 - 714	100	60 / 60	plus

Contig Sequence (1004 bp)

>U35_799 1004 Hv_44K_v2
CAGACTTATCATCATCAGCGCCCCTCCCTCTCTCCTCCTCGCGCGTCGTGATCCATCCAG
CCCAGGGGGAGTAGCTAATTAGTAACTAAGGTCGCCATGTCGGACTCCGAGGACCACCAG
TTCGAGTCCAAGGCCGATGCCGGGGCGTCCAAGACCTACCCTATGCAGGCCGGCGCCATC
CGGAAGGGCGGCTACCTCGTCATCAAGAACCGCCCCTGCAAGGTGGTGGAGGTTTCTACC
TCAAAGACTGGAAAGCACGGTCATGCTAAATGCCACTTTGTTGCCTTAGATATATTCAAT
GGTAAAAAGCTTGAGGACATTGTTCCTTCATCCCACAACTGCGATGTGCCACATGTAGAC
CGTACTGAGTATCAGCTGATTGACATATCAGAGGATGGATTTGTGAGCCTTCTTACTGAG
AATGGTAGCACTAAGGATGATCTTAAACTCCCAACTGATGATGCTATCCTGACCCAGCTC
AAGGATGGATTTGCTGAGGGGAAGGATTTGGCGCTGACTGTCATGTCGGCCATGGGGGAG
GAGCAGATCTGCGCAGTCAAGGACGTCGGCCCCAGGTAACTTCCTCGGAGCGAAGGGGCC
AAGATAAACTGAGTGATCCATTATCTGTCAAATTTAAGCTAAAGAAAGACGAAGTATTAA
AGAAGGAACTCTATCGAGTGAGACATTCACCTAAGCCGGAGTCAAGTGCAGTGATTGCTG
GGTGTAGCACATCTGCTTACCACTACCTATCATCCGTAACATTTGGGACCCTTGTGTTTC
CTATGGTTTTATATATGTACTTGGTGTCAATAATTGATTGATCTGGGACGGTGCAAACTG
TATGCCAGAAACGCCTGGCCATTATTATTGTGGATTTCATCATAGTATAAGGGTGGGGTG
CTCCATTTCTCGTAAAAAAAAAAAAAAAAAATTATAGATTAGATCTAACCACTATTTTTC
TTTTTAAAAAACTAAGCACTAAACTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_799 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g55150.4	162	3e-99	protein\|eukaryotic translation initiation factor 5A, putative, expressed
Brachypodium v1_2	Bradi1g22670.1	161	2e-102
Arabidopsis v10	AT1G69410.1	158	3e-90	\| Symbols: ATELF5A-3, ELF5A-3 \| eukaryotic elongation factor 5A-3 \| chr1:26089301-26090194 FORWARD LENGTH=158