barSeed - Barley Seed Development Database

Probe CUST_38130_PI390587928

Source Contig U35_28615

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38130_PI390587928	Hv_44K_v2	TGATTCATGGTACAAGTGACGATGTTGTCAATTTTTTCCATGGAAAGCAGATATGGGAGC	649	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361073	1497	7e-23	753 - 812	98	59 / 60	plus	None
MLOC	MLOC_20802.5	1284	7e-23	692 - 751	98	59 / 60	plus	None
MLOC	MLOC_20802.3	2036	7e-23	1005 - 1064	98	59 / 60	plus	None
MLOC	MLOC_20802.1	1722	7e-23	928 - 987	98	59 / 60	plus	None
MLOC	MLOC_20802.9	1332	7e-23	610 - 669	98	59 / 60	plus	None
MLOC	MLOC_20802.7	964	7e-23	310 - 369	98	59 / 60	plus	None
MLOC	MLOC_20802.4	1582	7e-23	908 - 967	98	59 / 60	plus	None
MLOC	MLOC_20802.8	1032	7e-23	310 - 369	98	59 / 60	plus	None
MLOC	MLOC_20802.2	1409	7e-23	615 - 674	98	59 / 60	plus	None
MLOC	MLOC_20802.6	1297	3e-21	550 - 610	97	59 / 61	plus	None
JLOC1	JLOC1_14419.4	1602	4e-23	610 - 669	98	59 / 60	plus
JLOC1	JLOC1_14419.3	1174	4e-23	182 - 241	98	59 / 60	plus
JLOC1	JLOC1_14419.2	1556	4e-23	564 - 623	98	59 / 60	plus
JLOC1	JLOC1_14419.1	1800	4e-23	564 - 623	98	59 / 60	plus
Harvest21	ABC27591	712	3e-25	650 - 709	100	60 / 60	plus
Harvest35	U35_28615	712	3e-25	650 - 709	100	60 / 60	plus

Contig Sequence (712 bp)

>U35_28615 712 Hv_44K_v2
GCGTCCTCGGTGGCCGCTAAGTTCGCCTTCTTCCCGCCAGACCCACCGTCTTACGGCGTG
GTGGACGAGGAGCCGCCTCCGCTGGGCGTGGCTCCGGCGGGGAGTGATGCTGCTGCGCTT
TCTAGGAGGGTGTTGATGACGGGGGTTCCGTGGAGGGAGGGGGTGGAGGCACGTCGCCTC
CGGACGCGGCGGGGCACGGAAATTATCGCCATGTATGTAGGGTGTCCCAAGGCGAGTCTC
ACGGTACTGTACTCGCACGGCAATGCTGCCGACCTCGGCAAGATGTATGAGCTCTTCATA
GAGTTCAGCGCTCGCCTCCACGTCAATATCATGGGGTATGATTATTCTGGTTATGGACGG
TCATCAGGCAAGGCAAGTGAAGCTAATACATTTGCTGACATAGAGTCTGCATATAAATGC
CTTGTGGAGGTTTATGGGACTAGGGAAGAAGACATTGTTCTTTATGGTCAATCTGTTGGT
AGTGGCCCCACTGTTGATTTAGCTGCTCACTTGCATCACATAAGAGCAGTTGTTCTGCAT
AGTCCCATACTTTCTGGCCTGCGTGTCATGTATTCTGTGAAGAAAACATATTGGTTTGAC
ATATATAAGAACATCGAGAAAATTCCCCTTGTTAAATGCCCTGTTCTGGTGATTCATGGT
ACAAGTGACGATGTTGTCAATTTTTTCCATGGAAAGCAGATATGGGAGCTGA

Homology of Contig U35_28615 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g38092.1	415	4e-120	protein\|abhydrolase domain-containing protein FAM108C1, putative, expressed
Brachypodium v1_2	Bradi3g38910.1	421	2e-120
Arabidopsis v10	AT4G24760.1	365	3e-87	alpha/beta-Hydrolases superfamily protein \| chr4:12761482-12763564 REVERSE LENGTH=365