barSeed - Barley Seed Development Database

Probe CUST_3811_PI390587928

Source Contig U35_38301

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3811_PI390587928	Hv_44K_v2	AGCACACAGGACTGCTATGCCCACACCTTATCATAGTGATGACAAATGAGCAGATTCAGA	569	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_33258.3	2346	2e-24	1814 - 1873	100	60 / 60	plus	None
MLOC	MLOC_33258.4	2501	3e-22	1980 - 2035	100	56 / 56	plus	None
MLOC	MLOC_33258.5	2149	3e-22	1104 - 1159	100	56 / 56	plus	None
MLOC	MLOC_33258.2	2297	3e-22	1917 - 1972	100	56 / 56	plus	None
JLOC1	JLOC1_21570.1	2620	8e-25	1823 - 1882	100	60 / 60	plus
Harvest21	ABC34211	633	3e-25	570 - 629	100	60 / 60	plus
Harvest35	U35_38301	633	3e-25	570 - 629	100	60 / 60	plus

Contig Sequence (633 bp)

>U35_38301 633 Hv_44K_v2
ATTGTTGACAGTAATAAATCACCCTCTCACCCCTGTGGAGTTTGAGAAGGCATGGTGGGA
CATGGTGAATGATTATGGACTCGAATCAGATCCTACAATTGGCAGTTTGTATGATATGCG
CGCAAGATGGATCGCCGCATACTTCAAGGATGTTTATTGTGGGAGAATGACATCTACGCA
ACGCAGTGAGAGCACAAACAGAATTGTGAAAAGAAACCACGTTGACCCTACAACACCTAT
GCATGTGTTTGCCAGAAAAATGTTCCAAGTTTTGCAAAGGAGAAAAGAAGCAGAAGCCCG
AGAGACCATTGAATCACAGGCCCGACGAAAAACAATAACCAACTACCCTCTGGAACATCA
GCTGAGCAGAGTCTATACCCGTGCAGTATTCAGGAAGTACAAAGAAGCATATGTTTATGG
AACATCTTTTCTTACAAAGAAAGTTGGCACGGGTCGTTTCCTTGTGCCGTACGGTAGAGA
CAGGCCAACTTTTTCATGGTCCCAACATGAGTTCAAAGTGGTTTTTGATGAAGAAAACGA
AGAATACAAATGTGAGTGCAAGCAGTGGGAGCACACAGGACTGCTATGCCCACACCTTAT
CATAGTGATGACAAATGAGCAGATTCAGAGGCT

Homology of Contig U35_38301 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g18910.1	534	3e-53	protein\|transposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi4g22000.1	699	7e-109
Arabidopsis v10	None