barSeed - Barley Seed Development Database

Probe CUST_38119_PI390587928

Source Contig U35_16641

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38119_PI390587928	Hv_44K_v2	ATGTTGTTGTTTGCGTGACGAAGAGTGAATGGTGACGCCTTTCCTGGTTCGGTTAAAAAA	1503	GeneList: thistle2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.533	1.469	2.915	2.294	0.708	0.676
Raw	239.543	1035.307	1829.953	2236.333	248.225	256.458

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_32751.1	1813	5e-22	1734 - 1788	100	55 / 55	plus
Harvest35	U35_16641	1574	3e-25	1504 - 1563	100	60 / 60	plus

Contig Sequence (1574 bp)

>U35_16641 1574 Hv_44K_v2
AGCTGCAGCCGCAGTCGCCACCCACCACCACTAGAGCCATCAAAGTGGGAGTCGACAAAA
AAGAATCAGCACTTGCTTGGCTTTCCAGCTAGTAATTCAGCTTGCCGTGAAAGGTCTAGA
GTAATACAGATCGAGGCCTTTCACGGCGTCGGTGGACCGGCTAGCAGCAATGGCGCGCGC
GTCCGGCGTCGGCGCCGCGATGCTCGTCGTCGCGCTCGCCGCCTTGTCGGTCGTCTTCGC
GCCGGGGGTGACGGCGCAGACCGGCAGCTGCGACGACGCGCTGCCGCCCGAGCTCGTCGG
CAACTACTCCGGGCTGGCCTGCAGCCCCGTCTGGAATAACTTCGTGCTCCGGTACGCGCA
GGGCGGGGACAACGTGCTGCGGGTGGTGCTCTCGGCGATGTACAGCTCCGGGTGGGTGGG
GATGGCCTTCTCCAAGGACGGCCTCATGGTGGGCTCGAGCGCCATGGTTGGGTGGGTCGG
CAAGACGGGGCAGCCCCACGTCAAGCAGTTCGCCCTCAACGGCAAGGCGCCCTCCATGGT
CGTCGCCGACAGGGGATTCCTCGTCTCCAACAACCGCGACCACACCGTCCTCGTCAAGCA
GGCCAAGATCTACCTCGCCTTCCAGCTCAAGTTCGACTCGCAGCTCAAGCAGCAGCAGGT
GCTCTTCGCCTTCGGCTCTGCCATCCCTGTCAACGACCGTCTTGCCGAGCACCAGGGCAA
GACGTCCATCACCTTTGATTTCACCACAGGCAGCTCTTCAGGTTCCTCCTTCCCGAATGG
CCTAAAGAGGACTCATGGGGCGCTCAACCTGTTCGCTTGGGGTGTCCTCCTGCCCATCGG
GGCCATTATCGCTCGGTACTGCAGGGGATGGGACCCTCTGTGGTTCTACCTTCATGGTGG
TATCCAGTTCGTCGGCTTCATCCTCGGCCTGGCCGGCGTTGTCGCTGGAGTATCACTCTA
CGGAAAGATCCAAGCAGATGTTCCGGCACATAGAGGCCTTGGCATATTTGTGCTTGTGCT
AGGTATCCTCCAGGTTCTTGCATTCTTCCTACGGCCCAACAAAGACTCGAAGTACCGGAA
ATACTGGAACTGGTATCACCATTGGGTAGGCAGGCTTGTTCTCTTCTTTGCGGCAGTTAA
CATTGTGGTGGGAATCAAAGTTGGAGGCGCTGGTAACTCGTGGAAGATCGGCTATGGTTT
CAACCTGGCCATCCTTCTGATCACTATCATCACCCTCGAAGTCCTCGTGTGGACAAGGTG
GAAAAACAACAGCGGTCCTGCGACGACGACATACTAACTATGCTTGATTAGGGTTCTTGT
TTTGTGAACCACTGAAGGCCCTATAATTTTCATTCGTTTTCTTCTTCTTGTGCTGTTGCA
GTAAGCATGTAATCTATTCTGCAGGATCTTGTAGCAAGGATCTGCAAGACTAGTGTATCG
ATGATGAGTTTTGGATTTGAAATGTAGTGTTTGAATGTAGTACTACCAAAAAAAAAAAAA
AAAATGTTGTTGTTTGCGTGACGAAGAGTGAATGGTGACGCCTTTCCTGGTTCGGTTAAA
AAAAAAAAAAAAAA

Homology of Contig U35_16641 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g48850.1	373	0.0	protein\|auxin-responsive protein, putative, expressed
Brachypodium v1_2	Bradi2g46630.1	376	0.0
Arabidopsis v10	AT3G61750.1	398	3e-94	Cytochrome b561/ferric reductase transmembrane with DOMON related domain \| chr3:22857897-22859254 REVERSE LENGTH=398