barSeed - Barley Seed Development Database

Probe CUST_38117_PI390587928

Source Contig U35_16642

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38117_PI390587928	Hv_44K_v2	GCTTTGTTCGTTATATGTGGATATCATAATGGAAATTGCAACATGTAAATCCTATGGGCT	1789	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.084	0.358	0.765	1.615	1.486	1.626
Raw	58.835	406.828	729.078	2312.681	771.758	926.885

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64806.1	2046	2e-24	1 - 60	100	60 / 60	minus	ABC05919 ABC05920
JLOC1	JLOC1_42593.1	2401	8e-25	2012 - 2071	100	60 / 60	plus
Harvest21	ABC05920	440	6e-22	371 - 424	100	54 / 54	plus	ABC05920
Harvest21	ABC05919	1796	6e-22	1743 - 1796	100	54 / 54	plus	ABC05919
Harvest35	U35_16642	1875	3e-25	1790 - 1849	100	60 / 60	plus

Contig Sequence (1875 bp)

>U35_16642 1875 Hv_44K_v2
CCTCCACCCCCTTCCCTCCCTTGAGGTAAGCACGAGCCGCTCCCATTGTTCTTCAAGCTC
GGCCTCGGCGTAGGGAAGCTTAGGATAGGCCCTCCTCACCTTCCGCCGCACCACCAAACG
CTTCTTGGTGGGACAAGGAAGGGATTGCCGGAAAAGCTTCTTGCCTTGCCCCGTTCTCTT
CTTCTTTAACTAGCCCTGGCGGTTGCCGCCTAGAGGTTCAGTAGGGCAGAGCAGGTGCCG
GGGAGGAGACACAGGTGCTGGGGAGAGGGGCAGGCTTGTGGGGATCGGGAGGATGATGGA
GAGGCGGGTCTTGGTTGCCATTGCGGTTCTTGCGGCGGCGGCGGCGCTGTTTGTTGCGGC
GGAGGCCCAGCAGGCGGCGGCGCAGCAGGGCCACCAGACAGAGAGGATCTCAGGAAGTGC
TGGTGACGTGCTGGACGATGACCCTGTTGGGCGTCTCAAGGTGTTTATCTATGATCTCCC
TGGAAAATACAACAAGAAGCTGCTGAAGAAAGACCCTAGGTGCCTGAACCACATGTTCGC
CGCGGAGATCTTCATGCACCGGTTCCTGCTGTCGAGCGCGGTCCGGACTACTAATCCCGA
GGAGGCAGATTGGTTCTACACACCTGTGTACCCGACATGCGACCTGACGCCTTCGGGTCT
CCCCTTGCCCTTCAAGTCTCCGCGGATGATGCGCAGCGCGATCGAGCTGATCGCAACGAA
ATGGCCTTACTGGAATAGATCGGAGGGGGCAGATCATTTCTTTGTCACACCACATGACTT
TGGCGCTTGCTTCCATTATCAGGAAGAGAAGGCAATTGGGCGAGGAATCCTTCCCTTGCT
TCAGCGTGCCACGCTGGTTCAGACCTTTGGACAAAAGAACCATGTCTGCTTGAAGGACGG
CTCCATCACAATTCCGCCATTTGCGCCTCCGCAGAAAATGCAAAATCACCTTATTCCCGG
AGAGACCCCTCGATCCATCTTCGTATACTTCCGTGGTCTGTTCTACGACACCGGCAATGA
TCCCGAGGGTGGATACTATGCGAGAGGTGCTCGTGCATCTGTCTGGGAGAACTTCAAGAA
CAACCCGCTGTTCGACATCTCAACGGATCACCCACCAACGTACTACGAAGATATGCAAAG
GTCTGTGTTCTGCCTGTGTCCATTGGGCTGGGCTCCATGGAGCCCCAGGCTGGTGGAAGC
CGTGGTTTTCGGTTGCATCCCGGTGATCATCGCAGACGACATCGTCCTGCCCTTCGCCGA
CGCCATCCCATGGGAGGAAATCGGCGTGTTTGTTCCCGAGGAGGATGTCCCGAGGCTGGA
CAGCATCCTGACATCCATACCAACAGAGGACATACTGAGGAAGCAAAGGCTTCTAGCAAA
CCCTTCGATGAAGCAGGCTATGCTGTTCCCCCAGCCAGCTCAAGCAGGGGATGCGTTCCA
TCAGATACTCAATGGGCTTGCTCGCAAGCTTCCGCATGGCGAAAGCGTCTTCTTGAAGCC
CGGCCAGGCCCGTCTGAACTGGACTGCCGGCCCGGTCGGTGACCTGAAGCCTTGGTAGCA
TCTCTCGCCTCGCGGTTTGGAGATGTAAAAAACCGTTTTTGAAAATAAACATTTACAGAC
CTGATATACTTTGCGCCTTTTTTATACTGCCATGGTTGCACAGTGCTGACCATAAGTCAA
ATGTACATCTTTTTCTTTACCTTCTTTGCTGATAGCTAGTATACCATAGAGCTTCATCCT
TTTTCTTTTTCTTCTTTTTTTAGTTGATGAAAAGTGCCATACATTGTGCGCTTTGTTCGT
TATATGTGGATATCATAATGGAAATTGCAACATGTAAATCCTATGGGCTGTCGTTTTTAA
AAAAAAAAAAAAAAA

Homology of Contig U35_16642 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g70200.1	418	protein\|exostosin family domain containing protein, expressed
Brachypodium v1_2	Bradi2g59410.1	419
Arabidopsis v10	AT5G61840.1	415	\| Symbols: GUT1 \| Exostosin family protein \| chr5:24839365-24841703 REVERSE LENGTH=415