barSeed - Barley Seed Development Database

Probe CUST_38116_PI390587928

Source Contig U35_16643

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38116_PI390587928	Hv_44K_v2	GATGTACCAAAATTGGATTGATAGAAATTGGCAAGCATACCGTATCTGTACTGAACAAAT	3046	GeneList: mediumpurple3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.243	1.981	1.169	0.717	0.455	0.246
Raw	121.573	168.004	85.585	79.354	18.170	10.739

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_36047.2	2909	8e-25	2719 - 2778	100	60 / 60	plus
JLOC1	JLOC1_36047.1	2911	8e-25	2721 - 2780	100	60 / 60	plus
Harvest35	U35_16643	3150	3e-25	3047 - 3106	100	60 / 60	plus

Contig Sequence (3150 bp)

>U35_16643 3150 Hv_44K_v2
TCCCCTCTTGCAAACCAGTTTTTGTCTCTAATCTCGTCGCCTCGCCGTCTCCCCACGCCC
CCAAAACCCTAGACGCAACCCGGCTCCGCCGTCGTCCGCCGCGGGCCGCGGCCATGGATC
TCCTCCGCGCGAACCTCCACAAGGTCCGCATCCCGGAGCCCACCAACCGCATCCACAAGG
ACGAGTGCTGCGTCTCCTTCGACACCCCGAGGTCGGAGGGCGGGCTGTACGTGGACATGA
ACTCGTTCCTGGGGTTCGGGAGGGAGCACGTCGCGTGGAACTTCGAGAAGTCGGAGAACC
CCGTGTACCTCCACATCGTGCAGCGCCGGAAGCCGGAGCCGGACGAGACAGATCGCCCGC
TGAAGAAGCCAACCCTGCTCGCCATCGGCGTGGAGGGAGGTTTTGGTGAACAAGAACCTG
AATACGATGTGACTTATGAAATCGTTATTTTGCCTGAATTCGAATCTCTCCCGTTTCCAT
CTGTTGACTTGCCAGAGAAGGTTAGGCTTGCCGTTGATAAAGTTATACTTGCGGAGAGTG
CTGATAGAAAGCAACAACTGGCTTTTTGGGTGGCTGACAAGAAGATAATCAGTGCACATG
CTATGGATCTGCAACAACTAGACAATGGTGTTATTGTGCCCCCTACCGGGTGGAAGTGTA
GCAAGTGTGACAAAACTGAGAATCTCTGGTTAAATTTAACTGATGGTATGATCCTCTGTG
GGAGGTGGGTCTGGGACGGAACTGGTGGGAATAATCATGCTGTTGAACACTACCAGCAGA
CTAAATATCCTTTAGCGGTGAAACTTGGAACAATTACTGCTGATTTGGAAGGAGCAGACG
TTTACTCATACCCGGAAGACGATAGCGTTGAAGATCCAATATTAGCTCAGCACTTGTCAC
ATTTTGGTATTGATTTTTCTTCACTCCAAAAGACTGAGATGACTACTGCTGAAAGAGAAC
TTGACCACAACACTAATTTTGATTGGAATAGAATACAAGAAAGTGGCAAAGATGCCGAAC
CTTTATATGGGCCGGGCTATACTGGCCTTGTAAACCTTGGAAATAGTTGCTACATGGCTT
CAGTGATGCAAGTTATGTTTTCAACTCATCCCTTTATATCACGGTACTTTGAGAAGCAGA
GCTTGAAAGCTGCGTTTGCAATTTCTCAAGCTGATCCAACGTTGGACTTAAACATGCAAA
TGACAAAGTTGGCCCATGGTATGCTCTCTGGTAAATATTCTGCACCCAGTCCAGAGGGAC
AGGAAGGAATACGTCCCCGTATGTTTAAGTCAGTAATTGCAGCAAGTCATCCTGAATTTT
CCAGTATGAGGCAACAGGATGCGCTTGAATTCTACCATCATCTTATTGACAAAGTTGATC
AGGCAAACCCTGGAAACCATGAGTTAAATCCTTGTACTGGCTTCAAGTTCATCATTGAGG
AGCGGGTTCAGTGTCCCTCTGGGAAAGTTTCTTACAATCAACATTGTGACAACTTTCTTA
CTTTGAGCATACCATTGCATGAAGCGACTAACAAAGAGCAGCTAGAAGTGTTCCATGAGA
AGAAAGCAGCAATGGACTTGGATGGAAAGGAATTGTCTAAGGAGGAAATCGTGAGGCCAA
GAGTCCCACTGGAGGCATGCTTAGCAAGTTTTTCAGGCGGAGAGGAAGTGCCTGAGTTTT
ACAGCACTGCATTAAATTCAAAGACGACAGCAATTAAGACTACTGGCCTTAAAACTTTTC
CTGATTACCTGGTGCTTCAGATGCGTAAGTTTGTGATGGGAGCAGGATGGGTGCCAAAGA
AACTTGATGTTTATATTGATGTGCCGGATATAATCGATATCTCGCACATGCGCAGCCATG
GTGTACAGCCTGGGGAAGAGCTACTGCCCGAAGGAGCTTCTTGTGGCAACAAAGCGGAAT
CTGCTCGTCCTGTTGCCGACGAGGATATTGTATCCCAGCTTGCAAACATGGGGTTCAATT
ACTTTGCCTGTCAGAAAGCTGCTATTAATACATCAAATGCAGGACTTGAGGAGGCAATGA
ATTGGCTCCTCTTACACACGGAGGATCCAGATATTAATGACCCGATATCTCAAGATCCAA
TGCCTGCAGAAGACACTATTGATGAAGCAAGTCTTCAAACTCTTGTTTCCTTTGGCTTTC
CAGAAGATGTTTCCCGAATGGCCTTGAAAGCTTCTGGTGGAAATATTGAGAGAGCCACGG
AGTGGGTTTTCAGCCACCCTGAAGCATCTAACTCTGTATCTGCTGATTCTTCAACAAGCA
CTGTAAAAGATGACAACTCGCACATATCAGATGGAAGTGGCAGATACAAGCTGACGGCAT
TTGTGAGCCACATGGGAACCTCTACACACTGTGGGCACTATGTCGCCCATATCCTCAAAG
ATGGGAGGTGGACAATCTTCAACGACAATAAGGTGGCTGCATCTGTTGACCTGCCCAAGG
ACATGGGATACCTCTATTTCTTTCAGAGGATAAGCAGTTAAAGCAGAAGGTTTGAAGTCA
TAGTTCATGCACACATATCATCCGGGAGCATGGCGGATGGTCGAAGGACTCTTGGTGCAA
ATCTGACTTGAAGCGACCATTTCGCCGCATCCTGACGTGCTGGTTTCTAGGCTGATCATG
CGGGATACTGCTTTGTTGGTTCAGACGTTATGCATTGGCAACTTCAGTTACGTTTATGCT
TAGTACCATGTGACTGTTCATGCAAAGTGAATGGTTATGTTTCGAGTCGTACAAAAAAAA
AAAAAAAATCTGTCAGCGCCCCGTTGGTTTCCTTTAGTTGGAATTTTATTCGAGCATTGT
TGTTTGCTTCTCTCGTCAAGAATTGTTGTTTACTTCTCTCGTGGTACCATTTGACTAGCA
CAGGAAGGAATGCCGCCCCGACTCAAAAGCAAGTCAATTGGCGGAAGTACTCTGATATGG
CAGTTCACGTCCGATTTAGCTTACGATACTTAAAACGGTATTGCTGAGCAAAGTGATCTA
AAGGTGATTTCATCTATCGTACTAAAATTGGATTTTTGTTTTGCGGGATGTACCAAAATT
GGATTGATAGAAATTGGCAAGCATACCGTATCTGTACTGAACAAATTAAAATTGTGTATC
GATTATTTGTTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_16643 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g08200.1	795	protein\|ubiquitin carboxyl-terminal hydrolase 14, putative, expressed
Brachypodium v1_2	Bradi2g04830.1	796
Arabidopsis v10	AT3G20630.1	797	\| Symbols: UBP14, TTN6, ATUBP14, PER1 \| ubiquitin-specific protease 14 \| chr3:7203001-7208340 REVERSE LENGTH=797