- Probe CUST_38109_PI390587928
- Source Contig U35_30939
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_38109_PI390587928 | Hv_44K_v2 | CAGGGATGTTTATACTACTGGGTTGGTTTATAGATCTGAGTGTTTTTCCGCAAAATAAAT | 335 | GeneList: tan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.502 | 0.714 | 2.302 | 2.883 | 0.803 | 0.925 |
| Raw | 7.799 | 16.682 | 48.571 | 91.070 | 8.920 | 11.812 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC31066 | 428 | 3e-25 | 336 - 395 | 100 | 60 / 60 | plus | ABC31066 |
| Harvest35 | U35_30939 | 428 | 3e-25 | 336 - 395 | 100 | 60 / 60 | plus |
Contig Sequence (428 bp)
>U35_30939 428 Hv_44K_v2 GTCATGGTAAATTCGTAGGTGATCTCTTGATAAGGATGGGCGATGGCATTTGGTAAAGTT ATTTGTAAAGCTTCAAATCTTGCCTGCTAGAGGAGTTCCTCTCCAAACCATAGGAGAGGC GATCTCCGAGCGCACCACGCCGCAACCTCTCCTCTGTCGGTAGATCGGCGCTCGTCGCCT CCCTCCTCCTCCGCTGGCTCTGCCAATGTCGGAGTGCGGGAAGGCCCCACTACCGGATTG ATTCCCCGATCAACAATGACTGGCTCTGGCTGGTTCCGGCGATTGAGCAGCAGTGGCGCG CCATCAGCCCATTCGGGAGCAACTTTTTTATTTTCCAGGGATGTTTATACTACTGGGTTG GTTTATAGATCTGAGTGTTTTTCCGCAAAATAAATAAATAAATATCTTGCTTGCTAAAAA AAAAAAAA
Homology of Contig U35_30939 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |