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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_3808_PI390587928Hv_44K_v2ATGTATTTTCTGAACATGGAGGATGTGCCAAAGAGCAGGATCTTCTATATCTTCTGGTCC560GeneList: lightyellow
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.3660.4981.0861.5361.1491.144
Raw 797.9311720.8623277.8177107.0271896.0602074.753



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC342176993e-25561 - 62010060 / 60plus
Harvest35U35_383066993e-25561 - 62010060 / 60plus



Contig Sequence (699 bp)

>U35_38306 699 Hv_44K_v2
GGGAAAGGCTTTTGAAGGAACAGAGACTGAGGGAGCAGCAGAGGATCCGTAAAGAAATAG
AGGAAAAAGAGGCGAGGGAAGCAGTAAAAATGATAGAAGATTTAACAGGGAGGGGCAAGA
ACAAGAAAAAAATTCACATTGAGGGGGATATGACAAAACAACATGCCATGGAGGTGGTGT
TGAATCAGCAGGTGAAGGAGCGTCAGGAGATGGAAAAGAAACTGGCGAAGCTTGCAAAGA
CAATGGATCACTTGGAGAGGGCAAAACGGCAGGAGGAAGCTCCACTAATCGAGGAGGCCT
TCCAGAAACGCCTCGAGGAAGAAAAGATCCTTCATGAGCAAGAGCAGCTGAGAGAGATTG
AGCTCAGCAAGCAACACCACGCGGGTGACTTGCAGGAGAAAAATAGGCTTTCTCGATTAT
TGGAGCATAAGAATGCTTTCCAGGAAAGAATTGTCCAACGTCGTGAATCTGAGTTTAGTA
GCCTAAGGAAAGAGAGGGAAGAAAGGATTAATCACTTGCTATCTTCAAGAAAGCGTGAAA
GGGAGACTGTACGCAAATTGATGTATTTTCTGAACATGGAGGATGTGCCAAAGAGCAGGA
TCTTCTATATCTTCTGGTCCCCGGACACCGCANAGGTGAGGAGCAAGATGACGTACGCGA
GCACCAACGAGAAGTTCAAGAGGACCCTGGACGGCATCC



Homology of Contig U35_38306 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os01g03070.29855e-73protein|transposon protein, putative, unclassified, expressed
Brachypodium v1_2Bradi2g01550.19844e-80
Arabidopsis v10None