barSeed - Barley Seed Development Database

Probe CUST_38081_PI390587928

Source Contig U35_22568

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38081_PI390587928	Hv_44K_v2	CCTGTGCTACCCGTCTATTTGTATTGATTCAGATATGAATTTCCTTTGCTAATCAAGTAA	469	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.589	1.910	1.390	0.811	0.242	0.320
Raw	100.559	199.286	123.998	118.019	12.029	17.101

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76534.1	2372	2e-24	1845 - 1904	100	60 / 60	minus	None
JLOC1	JLOC1_51031.1	2319	8e-25	1699 - 1758	100	60 / 60	minus
Harvest35	U35_22568	566	3e-25	470 - 529	100	60 / 60	plus

Contig Sequence (566 bp)

>U35_22568 566 Hv_44K_v2
CCACGCGTCCGGTTNGCACACACATTCGCCTCCTCCACCACAGCCCTTGCTCGAGCTGTT
GTGACAGACACGGCCGCATCCGCGACATTTTTCTTTCTCGCGGCTAGGATCATGGCCTCC
AAGATCTCCCGCGCCGTCGTCATCGCGGCCGTCGCCGCTTCTTGCTTCGCCGGGGCCGCT
CTGGCCGCCGACGAGCCCGCGCCGAGCCCGACTTCCGGTGCCGCGGCTGTCTCCTCGTCG
CTCGTTGCCGCCGTGCTCTGCCCGGCCGTGGCGTTCCTCCTTGGCAGCATGCGCCACTGA
CTGGGTTGGCCGAGTTCGCAGGTGCCGCGCGTGTCCACAGGCTCGCTCCATGGCGGATTT
TAGGCTCTTCGTGCGTGATCTTCGCCTTGTTTACATCCTTCCTAGTCTTACTACGTGTAC
TTAGAACATGTCTTCGATGCTGCTAGTGTTGGATGTGTTTTTTTCTTTTCCTGTGCTACC
CGTCTATTTGTATTGATTCAGATATGAATTTCCTTTGCTAATCAAGTAATCATGTTCTCT
GTTCTGGCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_22568 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None