barSeed - Barley Seed Development Database

Probe CUST_38067_PI390587928

Source Contig U35_46521

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38067_PI390587928	Hv_44K_v2	ATGTACTCCTGGTCCTGCAAGAGGAGCTACAAGAACGGATTCGTGTGGCACGATCTCGCG	462	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66158.5	1767	2e-24	340 - 399	100	60 / 60	plus	None
MLOC	MLOC_66158.3	2530	2e-24	855 - 914	100	60 / 60	plus	ABC46739
MLOC	MLOC_66158.4	1551	2e-24	466 - 525	100	60 / 60	plus	None
MLOC	MLOC_66158.2	2913	2e-24	1385 - 1444	100	60 / 60	plus	None
MLOC	MLOC_66158.7	2156	2e-24	483 - 542	100	60 / 60	plus	ABC46739
MLOC	MLOC_66158.1	3157	2e-24	1468 - 1527	100	60 / 60	plus	ABC46739
JLOC1	JLOC1_43580.2	3182	8e-25	1409 - 1468	100	60 / 60	plus
Harvest21	ABC46738	567	3e-25	463 - 522	100	60 / 60	plus
Harvest35	U35_46521	567	3e-25	463 - 522	100	60 / 60	plus

Contig Sequence (567 bp)

>U35_46521 567 Hv_44K_v2
CCCTCTCCTTCCCTTGGCCCTTGCTGTCCTCTCCAATAAAAGCTTCCGCGTCTCAGCCAT
CTCCAGTCCAGTCCACCACCCGTGTGCTGAACGGGATTGAATTTTGGCCGGAGCCTTCGG
GTTCAGCTTTCCAGGTGCTCGAGGCGCGCGCCGGGTGATTCCGTTCTCCAAAGCTTCCGG
CGTCTCGGAGGCGTGCGTACGTTTCGGCGGTGCTGAGAGACGGAGCCGCCATTGCCGAGG
GAAAGAGAGAGGAGAATGGAGGGGCGGGGGAGGCGGCCGCGGAGCCCGGAGCGGCGGAGA
CCGCCGGCGAGGAAGGTGCCGGTGGTGTACTACCTCACGCGGAGCCGGCACCTCGAGCAC
CCGCACTTCGTCGAGGTCCCGGCGCCCTCCTCCTCCGAGGGGCTCTACCTCAGAGATGTG
ATTCACCACCTCAACATGGTGCGCGGCAAGGGCATGGCCTCCATGTACTCCTGGTCCTGC
AAGAGGAGCTACAAGAACGGATTCGTGTGGCACGATCTCGCGGAGGACGACCTGNTCCTC
CCCGCGACCGACGGCGAGTACGTGCTC

Homology of Contig U35_46521 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None