barSeed - Barley Seed Development Database

Probe CUST_38065_PI390587928

Source Contig U35_46522

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38065_PI390587928	Hv_44K_v2	TTGTCCTCGTTGTCAGTTGTAGTAAGTGCCTGTTAATGCCATTTTGTGCTTGTTAAAAAA	11	GeneList: thistle2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.298	1.304	2.990	2.426	0.853	0.773
Raw	114.031	800.835	1554.153	1957.800	247.245	240.982

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66158.3	2530	3e-22	2471 - 2526	100	56 / 56	plus	ABC46739
MLOC	MLOC_66158.7	2156	3e-22	2097 - 2152	100	56 / 56	plus	ABC46739
MLOC	MLOC_66158.1	3157	3e-22	3082 - 3137	100	56 / 56	plus	ABC46739
JLOC1	JLOC1_43580.2	3182	1e-22	3023 - 3078	100	56 / 56	plus
JLOC1	JLOC1_43580.1	3201	1e-22	3042 - 3097	100	56 / 56	plus
Harvest21	ABC46739	414	3e-25	12 - 71	100	60 / 60	minus	ABC46739
Harvest35	U35_46522	414	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (414 bp)

>U35_46522 414 Hv_44K_v2
TTTTTTTTTTTTTTTTTAACAAGCACAAAATGGCATTAACAGGCACTTACTACAACTGAC
AACGAGGACAAAATTTCAACAAAGAACAGAAAAATTACATCACGCCTGAAGAATAAAGCT
AACATGCACATCTCAACAAAGAAAACACGAATCCGTCAGTAACTCATCATCATCTAAAGA
AGCAAAGAGAACGCCAAGTCACGCGGCCAAGTCAGCTGCAAGTCTGTCCAGGAGGCTTCA
GAACGCATCGTCGTCATCATCGTCGCAGGGCACGGTGCACTGGATCACGACACGAGCTCC
CGACGACAGCCCAGTGCAGTGACAAAAGGATGGAGCACTTAACTTTCCTCGATCTCGACG
AGCTTCTCCTTGTTCTCCTTCCTGAAGGACTCCGCCCTCGACCCCGGGGCGTCG

Homology of Contig U35_46522 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None