barSeed - Barley Seed Development Database

Probe CUST_38063_PI390587928

Source Contig U35_10595

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38063_PI390587928	Hv_44K_v2	AAGGGAGTTTTGGTAATCTAGACCGGAACAAGCAGAACATTTTTTGAATTTCTGAACATG	589	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61471.12	2122	2e-24	2038 - 2097	100	60 / 60	plus	ABC24303
JLOC1	JLOC1_40171.9	2741	8e-25	2669 - 2728	100	60 / 60	plus
JLOC1	JLOC1_40171.8	2369	8e-25	2297 - 2356	100	60 / 60	plus
JLOC1	JLOC1_40171.7	2432	8e-25	2360 - 2419	100	60 / 60	plus
JLOC1	JLOC1_40171.6	2484	8e-25	2412 - 2471	100	60 / 60	plus
JLOC1	JLOC1_40171.5	2208	8e-25	2136 - 2195	100	60 / 60	plus
JLOC1	JLOC1_40171.4	2936	8e-25	2864 - 2923	100	60 / 60	plus
JLOC1	JLOC1_40171.3	2197	8e-25	2125 - 2184	100	60 / 60	plus
JLOC1	JLOC1_40171.2	2785	8e-25	2713 - 2772	100	60 / 60	plus
JLOC1	JLOC1_40171.1	2471	8e-25	2399 - 2458	100	60 / 60	plus
Harvest21	ABC24303	681	3e-25	590 - 649	100	60 / 60	plus	ABC24303
Harvest35	U35_10595	681	3e-25	590 - 649	100	60 / 60	plus

Contig Sequence (681 bp)

>U35_10595 681 Hv_44K_v2
TTTATCATGTTTCACTTCCTTTTACATGATGAAGTGGAAAGAATATTTCCCCAGTAAAGA
ACTAGTGCAGCCACCACACTTCCAAGTAGAAGTTTTCTGTAACCTAGAACCAAGGATCGT
TTGTGATTATTTGTCCCAGAGGCAATCAGAATGTCACAACAGAAATCAATACGCGACATG
CTTTTGGATGTTAGTGAAATCTGGAGAAGACGAAAACAAAGCTAAGGAGATACTGAAGGA
CACATTACCAAAGGACAAGAATGAGTTACTTTTCCAGCGATTTCAAATGAACTACAACAA
TGAACCGGCTATGTTTCGAAAGGGTTCATGTGCTTACCGTCAAAAGGTGGAAGCCAGTGA
AGATGAGCGGTGGGATGTGGCGGTGGCCCACGTAGACATGGGGCCACACTTTTGGACAAC
GCATTCTCATGTTTTCAACAGAAGATGATGATCCTTATGTATTCTATAGGTTGATTAGTA
TGTGCCATATTATCCTCGTTTCTCTGATGCATATGGTTGCATTCTTTGTAAAGAAATTCA
CAAAGCGAATATTGATAGGTTGAAGGTTGCTATCTTTGCTAGAAAGACAAAGGGAGTTTT
GGTAATCTAGACCGGAACAAGCAGAACATTTTTTGAATTTCTGAACATGTTTTTAAATCA
TGTTATCGTTTCGATCACAAA

Homology of Contig U35_10595 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g45890.2	410	6e-69	protein\|tRNAHis guanylyltransferase family protein, expressed
Brachypodium v1_2	Bradi2g18677.1	515	2e-73
Arabidopsis v10	None