barSeed - Barley Seed Development Database

Probe CUST_38057_PI390587928

Source Contig U35_46527

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38057_PI390587928	Hv_44K_v2	ACTACTTCACCAAGCACTTCGACTGGGCGGTGTTCGAGAGCGAGCTCAAGTGGTACCACA	140	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373054	2262	7e-23	1020 - 1079	98	59 / 60	plus	ABC13792 ABC13793 ABC17526 ABC22400
MLOC	MLOC_60984.2	1995	7e-23	1006 - 1065	98	59 / 60	minus	ABC13792 ABC13793 ABC17526 ABC22400
MLOC	MLOC_60984.1	2542	7e-23	1239 - 1298	98	59 / 60	minus	ABC13792 ABC13793 ABC17526 ABC22400
JLOC1	JLOC1_39806.1	2312	4e-23	1008 - 1067	98	59 / 60	plus
Harvest21	ABC46751	346	3e-25	141 - 200	100	60 / 60	plus
Harvest35	U35_46527	346	3e-25	141 - 200	100	60 / 60	plus

Contig Sequence (346 bp)

>U35_46527 346 Hv_44K_v2
GGACGTGGTGCTCAAGTTCGCCGGCGCCGGGGCGTCGTCGGCGGTGTCGGGGGCGTCGAT
CCGGGTGATGCAGATGGACACGAGCTTCGCGTTCGGCGCGTGCATCAACCCGGCGGTGAT
CCAGGAGCCGGCGTTCGTGGACTACTTCACCAAGCACTTCGACTGGGCGGTGTTCGAGAG
CGAGCTCAAGTGGTACCACACGGAGGCGGTGCAGGGGCAGCTCAACTACGCCGACCCCGA
CGCGCTGCTCGACTTCTGCGACCGGCACGGCAAGCCGGTGCGCGGCCACTGCATCTTCTG
GGCCGTCGACCGCATGGTGCAGAAGTGGGTCAAGGACCTGCCCAAC

Homology of Contig U35_46527 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g04300.1	558	3e-52	protein\|glycosyl hydrolase family 10 protein, putative, expressed
Brachypodium v1_2	Bradi2g02320.1	590	5e-55
Arabidopsis v10	None